Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00108 ATGTCTGAAATCAAAGATCCGGCTATTAAGCTCTTTGGGAAGACGATTCCGTTGCCGGAAGGTCAGATTTCGGTTGAGTCTGGGGAGAAATACGATCCTGAATGTCAGATTCCGGCGGTGTCTGAAGATAAGGATCTACGCGGAGAAACAACAAAAGTAGAAGCTGATGAGGTTCCTGCAGACTCAGAAGAGCCTGGCATGACTGATAAAACTTCCTCTTTGAATGATTTTAAAGAAGACAACAATCAAACTCTTACTAAGGAGAACAAAGCTGCAGTAAATCCTAAGCCTGAGGGAGACCAGGTTGAAACTGATATGGCCGGCCAAGAGAAGGTTCTCAAGAAACCAGACAAGAGCCTCCCATGTCCTCGCTGCAATAGCTTAGACACAAAGTTCTGCTACTACAACAATTACAACGTGAACCAACCTAGGCATTTCTGCAAGAAGTGCCAAAGATATTGGACTGCCGGGGGGACAATGAGAAACGTTCCCGTGGGTGCTGGACGACGGAAGAATAAGCACACAGCCTCACAATACCGCCACATAATGATGTCCTCTGATGGAATGCAAACCACTCGGACCGACACCTTTGACTCAGCCAATCACCAAGTTCTCTCTTGTGGGGGGCTTTCTGCCCCTTTAAGGCCTCTTAAGGGAAACACGACAGTCCTAAAGTTTGGCCCTGATGCTCCTCTCTGTGAATCCATGGCGACTGTGCTGAATCTTAGAGATGAGAAGAAAAACGTTGAGATGGGTGCCGTATCTTGTGGAGAAAATGAAGATGAACCCTCCCCATGCGGGTCTTCCGTGACGGCTTCTACTTGTCGTGGAAACGAATTGCCCAAAAACGTGGCTCAGATGGAGCAAGGTGGTGTTCCAGGTGGTTGTAACGAGCTTCATCCTCCGACACATCCTCTGCAGTGTTATCCTGGTCCTCCATGGGGTTACCCTTGGAACTTGGGTTGGAACAATGCTACGGCAGCAGGTCGGTGCTCTTCTGAGCTGGTTTATGGACCGGATAATGGTAATCCCAAGCCAGTCCAGTGGGGTTCCGCATCAATGGTTGCAGCTCCTGCCTTTTGCACGCCAAGCATCCCTTTTCCATTTGTGCCTGCCTCCTATTGGGGCTCCATTCCCGGCTGGGCTGCCAGAGCATGGAATGTACCATGGATTGGATCTAATGGCAACCTATCCCCACCGTCCTCCACTAGCAACAGTGGCTGCTCAGGCAATGGCTCTCCAACCTTAGGCAAGCATTCCAGAGATGCGAATTTACAGGGAGAGGAGAAACATGAAAACTGCCTTTGGGTTCCCAAGACACTGAGAATTGATGACCCTGATGAGGCTGCAAAGAGTTCTATCTGGGATACGTTGGGTATTAAGCCTGATCAGAATGAACCCATAACAAAAGGTGGTATTTTTAAAGCTTTCCAGTCCAAGACAGAATGTAATGGTCATGCATCAGATACCATGCAGGTCTTACAAGCAAACCCGGCAGCTTTGTCTCGTTCTCAGACATTCCAAGAAAGCACGTAA 1536 0.487 MSEIKDPAIKLFGKTIPLPEGQISVESGEKYDPECQIPAVSEDKDLRGETTKVEADEVPADSEEPGMTDKTSSLNDFKEDNNQTLTKENKAAVNPKPEGDQVETDMAGQEKVLKKPDKSLPCPRCNSLDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKHTASQYRHIMMSSDGMQTTRTDTFDSANHQVLSCGGLSAPLRPLKGNTTVLKFGPDAPLCESMATVLNLRDEKKNVEMGAVSCGENEDEPSPCGSSVTASTCRGNELPKNVAQMEQGGVPGGCNELHPPTHPLQCYPGPPWGYPWNLGWNNATAAGRCSSELVYGPDNGNPKPVQWGSASMVAAPAFCTPSIPFPFVPASYWGSIPGWAARAWNVPWIGSNGNLSPPSSTSNSGCSGNGSPTLGKHSRDANLQGEEKHENCLWVPKTLRIDDPDEAAKSSIWDTLGIKPDQNEPITKGGIFKAFQSKTECNGHASDTMQVLQANPAALSRSQTFQEST* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00108 511 Pfam Dof domain, zinc finger 118 174 IPR003851 GO:0003677|GO:0006355
Eupl05g00108 511 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Eupl05g00108 511 MobiDBLite consensus disorder prediction 398 420 - -
Eupl05g00108 511 MobiDBLite consensus disorder prediction 39 117 - -
Eupl05g00108 511 MobiDBLite consensus disorder prediction 398 431 - -
Eupl05g00108 511 MobiDBLite consensus disorder prediction 103 117 - -
Eupl05g00108 511 PANTHER CYCLIC DOF FACTOR 2 1 511 IPR045174 GO:0003700|GO:0006355
Eupl05g00108 511 MobiDBLite consensus disorder prediction 39 59 - -
Eupl05g00108 511 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00108 Eupl-Chr5 2460325 2463652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00108 4 511 C2C2-Dof Transcription Factor Family AT5G39660 40.180 4.63e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl05g00108 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00108 - - msin:131251157 710.294