Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00102 ATGAGTTTACCACACCTCCAATCCTCCACTCTGTGTCAGAAGAGTGATGGTGAAAATGGTTGCAGAGGATTTGCAGGGTTGAGCTTTCTTCCACCTCCTCCTCCTCCTCCAGCTTCTTATCCTCCTAGTTTTGGGGTTTTGGGTTCTCCTGGAGAGAAAGTGGAGATGGGTTTTCAGCCATTGGAGCAGCAGATGAAAGGTTGGAACTTTCAGCCATCTGAGGGTAGCAAGGGCATAAGTGGGGTTGAGAGGTTTTGGGGGAATGAGAAAAATGGGATGGGTATGATGAACCAAGGTGGTGAGGAGGAAGAAAAAGGTGATTGCTCTGTAGCAGGAAAGGAGCATGAGAATGGACTGTCTAATAAGCTCTGTGCAAGAGGCCATTGGAGGCCAGCTGAAGATGCTAAGCTCAAAGAGCTTGTCTCTCAATATGGCCCTCAGAACTGGAACCTCATTGCTGAGAAGCTTGAAGGAAGATCAGGGAAAAGCTGCAGGTTAAGATGGTTTAACCAGCTAGATCCAAGGATTAACAGGAGAGCTTTTAGTGAGGAAGAAGAGGAGAGACTGTTAGCTGCCCATAGACTCTATGGGAACAGATGGGCCATGATAGCTAGGCTTTTTCCTGGGAGGACTGATAATGCAGTTAAGAACCATTGGCATGTGATCATGGCTAGGAAACACAGAGAGCAATCCAGTGTTTATAGGAGGAGGAAGCCCTCCTCTTCTTCTCAGGTCTATAAGAGGATGGAGATGACCCACCAACACAATGCATGCAGTGAGTCAACCATTACAAGCATCAGAGATGAATCTGCCTCAACCTGCACTGATCTCTCCTTGAATTCCTCTTCAAGCAGAGTTCATCCTGTTTTATTCACCAGATTTAGTCCACACCAACACTACCAGCCCTATGAATTTCAAATGGGCTCATCAGAAGAAAAGATGGTGACTTTGAGAAGTGGGTATTTCCAAAAGTTTGATAGTTCTGGCAATGGCTCCCATCATCCTGGGCCAATGGTGATGACTATGGGTATGGATCAACCTGGTTATTCAGATTCAAATTCTGAAGGCTCAGCAACTGAGTCAGTGGCCAACAACAGGAAGAATCTCTGTATGGATGGGGAAATTGATAATGGGGGTGTGAAGACCAGTCTGCCCTTCATTGATTTCCTTGGAGTTGGAGCCAATTAG 1188 0.463 MSLPHLQSSTLCQKSDGENGCRGFAGLSFLPPPPPPPASYPPSFGVLGSPGEKVEMGFQPLEQQMKGWNFQPSEGSKGISGVERFWGNEKNGMGMMNQGGEEEEKGDCSVAGKEHENGLSNKLCARGHWRPAEDAKLKELVSQYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLAAHRLYGNRWAMIARLFPGRTDNAVKNHWHVIMARKHREQSSVYRRRKPSSSSQVYKRMEMTHQHNACSESTITSIRDESASTCTDLSLNSSSSRVHPVLFTRFSPHQHYQPYEFQMGSSEEKMVTLRSGYFQKFDSSGNGSHHPGPMVMTMGMDQPGYSDSNSEGSATESVANNRKNLCMDGEIDNGGVKTSLPFIDFLGVGAN* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00102 395 ProSiteProfiles Myb-like domain profile. 126 172 IPR001005 -
Eupl05g00102 395 PANTHER MYB PROTEIN-RELATED 126 251 - -
Eupl05g00102 395 ProSiteProfiles Myb-like domain profile. 173 223 IPR001005 -
Eupl05g00102 395 Gene3D - 179 255 - -
Eupl05g00102 395 SMART sant 125 174 IPR001005 -
Eupl05g00102 395 SMART sant 177 225 IPR001005 -
Eupl05g00102 395 FunFam MYB transcription factor 179 250 - -
Eupl05g00102 395 CDD SANT 129 170 IPR001005 -
Eupl05g00102 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 172 IPR017930 -
Eupl05g00102 395 Gene3D - 126 177 - -
Eupl05g00102 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 227 IPR017930 -
Eupl05g00102 395 FunFam MYB transcription factor 126 177 - -
Eupl05g00102 395 Pfam Myb-like DNA-binding domain 129 189 - -
Eupl05g00102 395 SUPERFAMILY Homeodomain-like 126 219 IPR009057 -
Eupl05g00102 395 CDD SANT 189 220 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00102 Eupl-Chr5 2342620 2345204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00102 124 238 MYB Transcription Factor Family AT1G69560 88.696 6.40e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl05g00102 Myb_DNA-bind_6 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00102 K09422 - nnu:104588780 446.817