Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00101 ATGGGAGGCGCAGCAGCAACAACAACAACATCACTCGCTCCAGGTTTCCGGTTTCACTCAACTAACGAAGAACTCGTCAATTACTATCTCAAGTGCAAGGTCTGCGGAAAGCCCTTTCGGATTGATGCGATATCCGAAATCGATGTCTACAAATCCGAGCCGTGGGATCTTCTAGATCAGTTGCGGCTGAAGAGTAGAGACCTAGAGTGGTATTTCTTTAGTGCCCTAGATAAGAAGTACAGTAACGGATCAAGGATGAACCGCACTAAGGACCAAGGATATCAGATAAAAGAAATTCGGACATCGGATATTTGA 315 0.454 MGGAAATTTTSLAPGFRFHSTNEELVNYYLKCKVCGKPFRIDAISEIDVYKSEPWDLLDQLRLKSRDLEWYFFSALDKKYSNGSRMNRTKDQGYQIKEIRTSDI* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00101 104 Gene3D NAC domain 21 104 IPR036093 GO:0003677|GO:0006355
Eupl05g00101 104 Pfam No apical meristem (NAM) protein 14 98 IPR003441 GO:0003677|GO:0006355
Eupl05g00101 104 SUPERFAMILY NAC domain 6 94 IPR036093 GO:0003677|GO:0006355
Eupl05g00101 104 ProSiteProfiles NAC domain profile. 12 104 IPR003441 GO:0003677|GO:0006355
Eupl05g00101 104 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00101 Eupl-Chr5 2335074 2335471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00101 8 94 NAC Transcription Factor Family AT5G04410 73.563 1.43e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl05g00101 NAM 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00101 - - cave:132187037 148.288