Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00085 ATGGAAGAGGTTTCAGTTCTTACCCAAGGAGATGACTGTATTGATTTACCTCCTGGTTTTAGATTTCATCCTACAGATGAAGAAATCATAACCCATTATCTTTCAGAAAAGGTTCTAAATGGCAGCTTCATTGCTAGAGCTGTAGGAGAAGTAGATTTGAACAAGTGTGAGCCTTGGGATCTACCAAAGAAAGCAAAGATGGGGGTGAATGAATGGTATTTTTTCTGTCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATAGAGCAACAGAAGCTGGGTACTGGAAGGCAACAGGAAAGGATAGAGAGATTTATAAAGGGAAGGGTTGTCTTGTTGGGATGAAGAAGACTCTTGTTTTCTATAGAGGAAGAGCTCCCAAAGGAGAGAAAAGCAACTGGGTCATGCATGAATACAGACTAGAGGGCAAATTCTCTTACTATGGAAAGGATGAATGGGTTGTTTGTAGGGTATTTCATAAGAACACTGGGGTCAAAAAAAGTCCAATCAACTCTTTTGATGATGAACTATTGGATTCTCCTTCATTACCACCTCTACTTGATCCTCCATTCTTCAATTCAAACAAACCCAGATCGAGTTTTATGGATAGCCCAGATGAATTTGAAGTCATTGATGATCATCATGATCACCAAGATCACAAGAGCTTTCTTCTACCCAATCACCAAGTAAACCCATGTAACACACCACCAAACTCCATGTTCTACCCTCAAGTTTCTCTCCCAAATCAAATCTTCTCCTTTCAAGCATTTTCAAATTCGAGTTACTTGCACCAGGGAAGGAATAATTCAATTCCAAATTTTGCAAGCTCAGGTTATTTCAGTGGTCCTGATCAGGCAATCTTAAGAGATCTAGCTGCCAATCATGAAGCATATGAGTGTAAGGTAGAGCAGTTTTCCTGTAACCAGTCCATGATCAGCCTCTCGCAGGATACTGAGCCAAGTACAGATCGAAACACAGAAATTTCATCGGTGGTTTCGAAGAATGACATGGGAAGCAATAGGTCTTATGAAGATTTGGAATGTCTGTGGAACTACTGA 1062 0.404 MEEVSVLTQGDDCIDLPPGFRFHPTDEEIITHYLSEKVLNGSFIARAVGEVDLNKCEPWDLPKKAKMGVNEWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDREIYKGKGCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSYYGKDEWVVCRVFHKNTGVKKSPINSFDDELLDSPSLPPLLDPPFFNSNKPRSSFMDSPDEFEVIDDHHDHQDHKSFLLPNHQVNPCNTPPNSMFYPQVSLPNQIFSFQAFSNSSYLHQGRNNSIPNFASSGYFSGPDQAILRDLAANHEAYECKVEQFSCNQSMISLSQDTEPSTDRNTEISSVVSKNDMGSNRSYEDLECLWNY* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00085 353 Gene3D NAC domain 25 166 IPR036093 GO:0003677|GO:0006355
Eupl05g00085 353 MobiDBLite consensus disorder prediction 315 334 - -
Eupl05g00085 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 257 - -
Eupl05g00085 353 FunFam NAC domain-containing protein 100-like 25 166 - -
Eupl05g00085 353 ProSiteProfiles NAC domain profile. 16 162 IPR003441 GO:0003677|GO:0006355
Eupl05g00085 353 SUPERFAMILY NAC domain 13 163 IPR036093 GO:0003677|GO:0006355
Eupl05g00085 353 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00085 Eupl-Chr5 1845891 1847159 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00085 1 353 NAC Transcription Factor Family AT5G18270 48.223 1.87e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl05g00085 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00085 - - msin:131227616 464.536