Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00042 ATGGCTTTACAGAACATAGGTGCTGGAAACAGTGATGATGCCTTTTACAGGTATAAGATGCCTAAGATGATAACTAAGATCGAAGGTCGGGGAAATGGCATCAAGACTAATGTTGTCAACATGGTAGATATTGCAAAGGCCTTGGCCAGGCCTGCGTCTTACACCACAAAGTATTTTGGTTGTGAACTTGGAGCTCAATCCAAATTTGACGAGAAGACTGGAGTTTCACTTGTAAACGGGGCCCATGACACTGCTAAGCTTGCTGGGCTCCTTGAGAACTTCATCAAGAAATACGTGCAGTGCTATGGATGTGGGAATCCTGAGACTCAGATTCTCATCAGTAAAACCCAGATGATCCAGCTAAAATGTGCGGCCTGTGGTTTTATGTCTGATGTGGACATGAGGGACAAGCTCACGACGTTCATACTCAAGAATCCGCCTGAACAGAAGGGATCAAAGGATAAGAAGGCAATGCGGAGGGCCGAGAAGGAACGACTTAAGGAAGGGGAGGCAGCTGATGAGGAGCAGAAGAAGCTGAAGAAGGTGGTGAAGAAGAAGGGCTCCACTACTTCCAAGGATGTGGCCTCAAAGGGTGGTGCCCCCACAAAGAAGAAGGCCGTGTCTGATGAGGATCACTCCTCGCATGGTGGCAGTCAGGCTGATGAGAACGAAGCAGCTGATGAAGATAATGATGACATTGAGTGGCAGACGGATACTTCTTTGGAGGCCGCTCGTCAGCGTATCCAAGAACAGTTGAGCGCTGTGACAGCTGAGATGGTTATGCTTTCCACTAATGAGCCAGACAAGGAGAAGCCACAATCAGCAAAGAAAGCGGGCGCTACTACCAAGAATGGTACTCCAGAACCCGAAGATAAATCTGAGCCAAAGGGAGCTGAGAATGGAACCACTATGGTTAGCACACAGGAAAGGCTAGTCGAGGAGATCAAAGGGAATCTAAAGAAAGGGTTCACTGTGAGCCAGGTGCAGTCCTTGTTGGCGTCACTGAATGGTTCACCACAGGAGGTCATGATTGCACTGTTTGAGTCCCTTTTTGAGGGTGTCGAGAAAGGATTTTCCAAGGAGGTGACCAAGAAGAAGAACTACCTTGCTGCTGCTACCCAGGATGAGGGATCACAGATTCTTCTGCTGCGAGCAATAGAGGTCTTCTGCAGGAAATCAAACCCAGAGGCAGTGAAAGAGGTGGCCCTGGTTTTGAAAGCACTCTATGATGCTGACGTGTTGGAAGAAGAGTACGTAGTACAGTGGTATCAAGAAGGCCTGGCTGGAGGCAACAAGAACTCCCAGATTTGGAAGAACATCAAGCCCTTCATTGAATGGCTCCAGAACGCAGAGTCTGAATCAGAATAG 1368 0.4832 MALQNIGAGNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGVSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETQILISKTQMIQLKCAACGFMSDVDMRDKLTTFILKNPPEQKGSKDKKAMRRAEKERLKEGEAADEEQKKLKKVVKKKGSTTSKDVASKGGAPTKKKAVSDEDHSSHGGSQADENEAADEDNDDIEWQTDTSLEAARQRIQEQLSAVTAEMVMLSTNEPDKEKPQSAKKAGATTKNGTPEPEDKSEPKGAENGTTMVSTQERLVEEIKGNLKKGFTVSQVQSLLASLNGSPQEVMIALFESLFEGVEKGFSKEVTKKKNYLAAATQDEGSQILLLRAIEVFCRKSNPEAVKEVALVLKALYDADVLEEEYVVQWYQEGLAGGNKNSQIWKNIKPFIEWLQNAESESE* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00042 455 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Eupl05g00042 455 Coils Coil 158 178 - -
Eupl05g00042 455 CDD W2_eIF5 306 455 - -
Eupl05g00042 455 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Eupl05g00042 455 SMART 542_3 366 453 IPR003307 GO:0005515
Eupl05g00042 455 MobiDBLite consensus disorder prediction 148 191 - -
Eupl05g00042 455 MobiDBLite consensus disorder prediction 143 232 - -
Eupl05g00042 455 Gene3D - 300 448 - -
Eupl05g00042 455 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Eupl05g00042 455 Gene3D - 3 104 - -
Eupl05g00042 455 SUPERFAMILY ARM repeat 308 451 IPR016024 -
Eupl05g00042 455 Gene3D - 105 145 - -
Eupl05g00042 455 MobiDBLite consensus disorder prediction 264 305 - -
Eupl05g00042 455 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Eupl05g00042 455 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 454 IPR045196 GO:0003743|GO:0006413
Eupl05g00042 455 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Eupl05g00042 455 MobiDBLite consensus disorder prediction 203 222 - -
Eupl05g00042 455 Pfam eIF4-gamma/eIF5/eIF2-epsilon 379 455 IPR003307 GO:0005515
Eupl05g00042 455 ProSiteProfiles W2 domain profile. 288 455 IPR003307 GO:0005515
Eupl05g00042 455 FunFam Eukaryotic translation initiation factor 5 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00042 Eupl-Chr5 936607 941863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00042 1 450 Eukaryotic Initiation Factors Gene Family AT1G77840 62.555 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00042 K03262 - nnu:104588720 692.189