Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00041 ATGGGTTTCATATTACGTAACTCAAAAGAGACATGTCTTTTGGCAGGTGGGATCGATGCCAGAACACAATCTGTTGAAGAAGTAGAAGTTCGAGCAATGAGATGGGGCTTCCAGATGGTGGTGCAATTTTGCAGGCCAGCCGGCATTATCGTGGAGTCGGATTCCAAAATGATTGTAGATGTGCTGAGGAATGGTTCGTCTGCTCTTGGAAAATTTTCTATAGCTTGGGCTGTTGATATTTTGAACATGAGTACGCTTGCTTTTCTTCCTTTTTGTTTGTATATACTCCTCGAGCTTCCAATGTGGTTGCTCATACTACCACTGCTAGGGCATCTAAATAAGAAGACTCATGAGAGCATCAACAATCGTCTGGCTCTGGTTATGAAGAGCGGGAAGTACACGCTTGGATACAAGACCGTTCTCAGATCTCTTAGGAGTTCCAAAGGGAAGCTGATCATCATTGCCAACAACTGCCCTCCTCTTCGGAAGTCTGAGATAGAGTACTATGCTATGCTTGCCAAGGTTGGGGTTCATCACTTCAACGGAAACAACGTGGACTTGGGTACTGCTTGTGGTAAATATTTCCGGGTATGCTGTCTCAGCATCATTGACCCAGGTGATTCTGATATCATTAAGAGCATTCCTGGTGATCAGTGA 657 0.446 MGFILRNSKETCLLAGGIDARTQSVEEVEVRAMRWGFQMVVQFCRPAGIIVESDSKMIVDVLRNGSSALGKFSIAWAVDILNMSTLAFLPFCLYILLELPMWLLILPLLGHLNKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHFNGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKSIPGDQ* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00041 218 SUPERFAMILY L30e-like 119 212 IPR029064 -
Eupl05g00041 218 Pfam Reverse transcriptase-like 2 83 IPR002156 GO:0003676|GO:0004523
Eupl05g00041 218 ProSitePatterns Ribosomal protein L30e signature 2. 186 206 IPR022991 -
Eupl05g00041 218 Hamap 50S ribosomal protein L30e [rpl30e]. 118 215 IPR000231 GO:0003723|GO:0003735|GO:0022625
Eupl05g00041 218 FunFam 60S ribosomal protein L30 110 214 - -
Eupl05g00041 218 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 119 211 IPR004038 -
Eupl05g00041 218 PANTHER RIBOSOMAL PROTEIN L30 113 216 IPR039109 GO:0003723
Eupl05g00041 218 Gene3D - 111 214 IPR029064 -
Eupl05g00041 218 ProSitePatterns Ribosomal protein L30e signature 1. 130 154 IPR022991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00041 Eupl-Chr5 921617 928618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00041 114 218 Cytoplasmic Ribosomal Protein Gene Family AT1G77940 87.619 3.64e-67 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00041 K02908 - msin:131227828 215.698