Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00020 ATGTGGATTGCGTACGGGCAAAACAACATGGAGTGCTCGGCAGGGTTTGGTGCCGCGGATCCGCTGACTTTCTATCTTCTCCTGGACCGACACTCGGACGAAGGAGACACCGAGAAAATGCAGTCCATTCTGAAGAAATATTTTGGATATTCCGACTTCCGTCCGTATCAGAAGGAGATAATCGAGAAAATCTTAGAGGGAAGAGACTCCTTAGTTGTCATGGCCACTGGAAGCGGAAAGTCTTTGTGTTATCAGATTCCTCCCTTGATTTTAGGGAAGACAGCTGTTGTCGTAAGCCCTCTTCTAGCGTTGATGCAAGACCAGGTCATGTCTTTAAAACAACGAGGCATCAAAGCCGAATATCTTGGAAGCACTCAGACTAAATCCGCTGTCGACTTTAATGCCGAAAGTGGTTGTTTTAGTATTTTGTACATGACGCCAGAGAAGGCATGCTCACTTCCTCCTAGGTTCTGGTCAAATTTAAAAAATATGGGAATTTGTTTGGTGGCTGTTGACGAAGCTCATTGCATTTCAGAGTGGGGCCATGATTTCAGGAAGGAATACAAGCAGTTAGACAACTTACGTGGTATTCTCTTGAATGTTCCTTTTGTTGGCTTAACTGCAACTGCTACTAAGAAGGTACAACTGGACATTATTCATTCCTTGAAGATGAAAGATCCATACATTACCATTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGTCAAGTCATTCAGTCGAAGTCTTTCATTTGTGGATGAGCTTGTGGGAGAAATCTCAAAATATGTAGCTAATGCTGGCTCAACTATCATATATTGTACAACAATAAAAGATGCCGAACAGATTTTCAAGTCACTTCAGCAGGTTGGAATCAAGGTTGGAATTTATCACGGTCGAATGGCTAGTAAATCCCGTGAGGAGTCCCACAGATCATTTATAAGAGATGAACTGCACGTCATGGTTGCAACTATAGCTTTTGGCATGGGAGTTGATAAGCCAAACATAAGGTGTGTGATACACTATGGTTGCCCAAAGAGTCTCGAGTCTTATTATCAGGAAAGTGGACGGTGTGGCAGAGATGGCTTAGCTTCTATCTGTTGGCTTTATTATACAAGAAGTGATTTTGCAAAAGCTGATTTCTACTGTGGAGAATCCCACACAGGGAATCAAAAAAAAGCTATCATGGAGTCTTTGATGGCAGCACAACAGTATTGCTTGCTGGCAACTTGCCGTAGAAAGTTCTTGCTAGAGTACTTCGGGGAGAAAATTACATCCAATAATTGTGGTAATTGTGATAATTGCACCAACACAAAAAGGCACCGTGACATGTCTAGAGAAGCATTTCTGTTGATGTCTTGCATAGAATCTTGTGGGGGTCGTTGGGGACTCAATATGCCCATAGACATTCTTCGGGGATCTCGTTCGAAGAAAATTCTTAATGTTCAATTTGATAAGCTTCCACTTCATGGACTCGGGAAAGATTATTCAGCAAATTGGTGGAAAGCACTTGCTGGGCAACTGATTGCTTATGGTTATTTGACAGAGACTATTTCGGATGTGTATAGAACTATAAGTGTCAGCTTAAAAGGAGTGGAGTTTCTTAGTACTGCTAGCCGTGATCATCAGCCACCGTTAATTTTGGCAGTGACTACTGAAATGGTTGATGAGGAAGAACATAGGAACACAATCGGAAACGTTGAAGGTGACCTTCATAATTTGGTTGCTCTAGGATGTGAAGAATTTTCTGAGGCTGAGGCAAAACTCTACCACATGCTTTTAGAAATGAGACTGAAGCTTGCTAGAAGCACTGGGACAGCTCCATATGCAATCTGTGGTGATCAAACAATTAAAAAGATCACAATGACAAGACCATCTACCAAAGCAAGGTTAGCGAACATCGATGGTGTCAACCAGCACCTTTTAACTACATATGGGGATCATATTCTTCAAAATATCAAAAATTTATCACAAGAGCTGAATCTCTCTTTGGATGGTGTGGCAAGCACACAAACTGCTATCACAAAAAAGGTGTATCCAGTCCCAAACTCCCAGAGAAAATTAACTCCAGCAAAATTTGATGCATGGAGAATGTGGCATGAGGAGGGGCTTAATATTCAGAAAATTGCTAACTTCCCTGGGAGACAAGCTCCGATTAAAGAACAAACTGTTTGTGAATATGTTCTTGAAGCTGCCCAGGAGGGATTTGAAATAAATTGGACCAGATTCTGTGAGGAGATTGGGATGACACATGAGGTGTTCATAGAAATTCAGGGTGCTATTCAAAAAATTGGATCGAGTGAAAGGTTGAAGCCGATAAAAGACGAATTACCAGAACATGTAAGTTATACTCTCATCAAGGTGTGTTTGACAATGCAAAGCCTTGGATTATCTACAGAAGTAATTCTGGGTCCCCATTCAGTGAAACTAGGTGCACTTCCCACCAAAACAGAATCGTCGTTGAGACCCAACTTTACAGGCAATCTTGAAAGACCTCATAAATCTGAAGCCTTAATCAATGATGTGGTCGGGTCTTGTTCCTCAGATGGGAAAGAAGGTGCACCTTTCAACCCTGAAGGACAAACTGGCACAAAGCAACCCCGAGTCAATGGAGATGAAATTCGCTCCAGGAAATGCCAGAAAATCGACAGACCAGATGAGAATATCATTGCATTGGAGGCAACTGAAAGCGCCATCTTAGAGTGGCTTAGAAACTGTGATGGGGTTGCTGTGTCTGATATTGTGGAGCATTTCAGTGGATCAAGGGAAGAGTCTGTGGTTGAACTGTTAAGCTACCTTGAGAGTGATTTTTTAATATTCAAAAAGAATGATTTGTACAGACTTATGTAA 2850 0.4175 MWIAYGQNNMECSAGFGAADPLTFYLLLDRHSDEGDTEKMQSILKKYFGYSDFRPYQKEIIEKILEGRDSLVVMATGSGKSLCYQIPPLILGKTAVVVSPLLALMQDQVMSLKQRGIKAEYLGSTQTKSAVDFNAESGCFSILYMTPEKACSLPPRFWSNLKNMGICLVAVDEAHCISEWGHDFRKEYKQLDNLRGILLNVPFVGLTATATKKVQLDIIHSLKMKDPYITIGSFDRPNLFYGVKSFSRSLSFVDELVGEISKYVANAGSTIIYCTTIKDAEQIFKSLQQVGIKVGIYHGRMASKSREESHRSFIRDELHVMVATIAFGMGVDKPNIRCVIHYGCPKSLESYYQESGRCGRDGLASICWLYYTRSDFAKADFYCGESHTGNQKKAIMESLMAAQQYCLLATCRRKFLLEYFGEKITSNNCGNCDNCTNTKRHRDMSREAFLLMSCIESCGGRWGLNMPIDILRGSRSKKILNVQFDKLPLHGLGKDYSANWWKALAGQLIAYGYLTETISDVYRTISVSLKGVEFLSTASRDHQPPLILAVTTEMVDEEEHRNTIGNVEGDLHNLVALGCEEFSEAEAKLYHMLLEMRLKLARSTGTAPYAICGDQTIKKITMTRPSTKARLANIDGVNQHLLTTYGDHILQNIKNLSQELNLSLDGVASTQTAITKKVYPVPNSQRKLTPAKFDAWRMWHEEGLNIQKIANFPGRQAPIKEQTVCEYVLEAAQEGFEINWTRFCEEIGMTHEVFIEIQGAIQKIGSSERLKPIKDELPEHVSYTLIKVCLTMQSLGLSTEVILGPHSVKLGALPTKTESSLRPNFTGNLERPHKSEALINDVVGSCSSDGKEGAPFNPEGQTGTKQPRVNGDEIRSRKCQKIDRPDENIIALEATESAILEWLRNCDGVAVSDIVEHFSGSREESVVELLSYLESDFLIFKKNDLYRLM* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00020 949 Gene3D - 32 234 IPR027417 -
Eupl05g00020 949 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 259 403 IPR001650 -
Eupl05g00020 949 Pfam Helix-turn-helix domain 695 790 IPR029491 -
Eupl05g00020 949 Pfam HRDC domain 587 653 IPR002121 GO:0003676
Eupl05g00020 949 Gene3D - 236 437 IPR027417 -
Eupl05g00020 949 PANTHER DNA HELICASE RECQ FAMILY MEMBER 36 722 - -
Eupl05g00020 949 Pfam DEAD/DEAH box helicase 55 215 IPR011545 GO:0003676|GO:0005524
Eupl05g00020 949 SMART ultradead3 49 246 IPR014001 -
Eupl05g00020 949 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 228 IPR014001 -
Eupl05g00020 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 376 IPR027417 -
Eupl05g00020 949 SMART RQC_2 443 547 IPR018982 GO:0006260|GO:0006281|GO:0043138
Eupl05g00020 949 NCBIfam RecQ family ATP-dependent DNA helicase 42 495 IPR004589 GO:0004386|GO:0006310
Eupl05g00020 949 Pfam Helicase conserved C-terminal domain 262 361 IPR001650 -
Eupl05g00020 949 SMART helicmild6 281 362 IPR001650 -
Eupl05g00020 949 ProSiteProfiles HRDC domain profile. 583 663 IPR002121 GO:0003676
Eupl05g00020 949 FunFam ATP-dependent DNA helicase 37 234 - -
Eupl05g00020 949 CDD SF2_C_RecQ 236 371 - -
Eupl05g00020 949 FunFam ATP-dependent DNA helicase 579 669 - -
Eupl05g00020 949 FunFam ATP-dependent DNA helicase 438 562 - -
Eupl05g00020 949 CDD DEXHc_RecQ 41 235 - -
Eupl05g00020 949 Pfam RecQ zinc-binding 374 436 IPR032284 -
Eupl05g00020 949 Gene3D - 438 563 IPR036388 -
Eupl05g00020 949 FunFam ATP-dependent DNA helicase 236 437 - -
Eupl05g00020 949 SUPERFAMILY HRDC-like 581 663 IPR010997 GO:0000166|GO:0044237
Eupl05g00020 949 Pfam RQC domain 439 536 IPR018982 GO:0006260|GO:0006281|GO:0043138
Eupl05g00020 949 Gene3D HRDC domain 580 663 IPR044876 -
Eupl05g00020 949 SUPERFAMILY "Winged helix" DNA-binding domain 434 536 IPR036390 -
Eupl05g00020 949 MobiDBLite consensus disorder prediction 847 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00020 Eupl-Chr5 269300 337519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00020 48 378 Eukaryotic Initiation Factors Gene Family AT3G19760 21.143 4.02e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00020 K03654 - msin:131253707 1312.75