Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl05g00001 ATGGAAGCTCTGGTCTGCAAAAAGATCGGTGATCCAACGGTCCCAATGTCTGAAAGCTCACCAATCTCCATCTCGACCTCTTATACAGTCCCTGAATTGAATTCTCCGACCGCTATTAGAATAAGAGTTAAAGCTACGAGCTTAAACTACGCGAATTACCTACAAATATTAGGGAAATACCAAGAGAAACCACCTCTCCCTTTCATCCCGGGCTCCGATTACTCTGGCGTCGTCCAAGCCGTCGGAAGCAGAGTCTCTAAGTTCAAAATTGGCGACAGGGTTTGCTCGTTCTCTGGGCTTGGGTCTTTCGCCGAGTTTATAGTCGCAGAAGAGAAAGATTTGTTTTTGGTTCCCGATGAATGTGATCTCATTGCTGCTGGTGCACTCCCTGTTGCATTTGGAACTTCACATGTAGCTCTTGTTCATAGAGCACAATTGAGTTCTAGTCAGGTCTTACTTGTCCTTGGTGCTGCCGGTGGTGTTGGGCTTTCAGCTGTACAGATTGGGAAGGTTTGCGGTGCCATTGTTATTGCTGTTGCTAGGGGAGCTGAAAAGGTGCAATTTCTCAAGTCATTGGGTGTCGACCATGTTGTTGACTCGACCAAGGGGAGCATTATTGAAAGTGTGAAGGAGTTCTTGAAGGCAAGAAAGCTTAAAGGGGTTGATGTTCTATATGATCCAGTGGGAGGCAAGCTTACAAAAGAAAGCATGAAGCTTCTTAATTGGGGAGCAAATATTCTGGTCATAGGGTTTGCTAGTGGAGAAATCCCCGTCATCCCAGCAAATGTTACTCTTGTTAAGAATTGGACAATACATGGACTCTACTGGGGGAGCTACAAAACACACCGACCAAGTGTTCTTGAAGATTCTGTTAAGGAGCTACTTTCCTGGCTAGCAAGGGGATTGATAACTATTAATATTTCTCATACGTACAGTCTGTCAGAGGTT 948 0.4515 MEALVCKKIGDPTVPMSESSPISISTSYTVPELNSPTAIRIRVKATSLNYANYLQILGKYQEKPPLPFIPGSDYSGVVQAVGSRVSKFKIGDRVCSFSGLGSFAEFIVAEEKDLFLVPDECDLIAAGALPVAFGTSHVALVHRAQLSSSQVLLVLGAAGGVGLSAVQIGKVCGAIVIAVARGAEKVQFLKSLGVDHVVDSTKGSIIESVKEFLKARKLKGVDVLYDPVGGKLTKESMKLLNWGANILVIGFASGEIPVIPANVTLVKNWTIHGLYWGSYKTHRPSVLEDSVKELLSWLARGLITINISHTYSLSEV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl05g00001 316 Pfam Zinc-binding dehydrogenase 160 298 IPR013149 -
Eupl05g00001 316 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 284 IPR036291 -
Eupl05g00001 316 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 149 170 IPR002364 GO:0008270|GO:0016491
Eupl05g00001 316 Pfam Alcohol dehydrogenase GroES-like domain 37 96 IPR013154 -
Eupl05g00001 316 SUPERFAMILY GroES-like 30 147 IPR011032 -
Eupl05g00001 316 CDD QOR1 1 316 - -
Eupl05g00001 316 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 316 - -
Eupl05g00001 316 Gene3D - 132 279 - -
Eupl05g00001 316 Gene3D - 33 316 - -
Eupl05g00001 316 SMART PKS_ER_names_mod 22 303 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl05g00001 Eupl-Chr5 63 3172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl05g00001 67 265 Monolignol Biosynthesis Gene Families AT1G72680 27.119 4.27e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl05g00001 K00344 - nnu:104588386 516.153