Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02247 ATGAGGAACTCTGCAAACGCAAATCATGTTATGATGGAGATAGAGGCGAGCAAGCCGACGGGAAGTGGAATTGTGGTAGGAACGTTGAGTCCTCTGAGTGAGACTTTGTGGAAGGAAAAGACGGATACGGATTTCTTTGGGGATGTTTCAGCGAGGCTCACTTGGAAGGATCTGACGGTGATGGTTACACTTGGAAACGGAGAAACCCAGAACGTCTTGGAGGGGTTAACTGGGTATGCCGAGCCAGGGAGCTTGATGGCTCTCATGGGTCCTTCCGGTTCGGGAAAATCGACTCTTCTTGATGCTCTGTCCAGTCGCCTCGCTGCCAACGCTTTCCTCTCTGGCACCATACTCCTCAACGGACGGAAGACCAAGTTGTCGTTCGGAACGGCGGCGTATGTGACTCAAGACGACAACTTGATTGGTACTTTAACGGTTCGGGAAACAATTTCATACTCTGCTCGTCTTCGTCTCCCTGATCAAATGCCTTGGTCGGACAAGCGGGCTCTGGTTGAGAGTACCATTATTGAAATGGGTCTGCAAGACTGTGCTGATACGGTAATTGGGAACTGGCATTTACGTGGGATCAGTGGAGGAGAGAAGAGGAGAGTCAGCATTGCTCTGGAAATCCTTACGAGACCCCGATTGCTTTTCCTCGATGAGCCGACGAGTGGATTAGATAGTGCTTCAGCCTTCTTTGTGACCCAGACATTACGCGGTCTGTCGAGAGACGGGCGGACAGTTATAGCCTCAATTCACCAGCCCAGCAGTGAGGTTTTTGAGCTTTTTGATCGCTTATACTTGCTCTCGGGAGGCAAGACAGTTTACTTTGGGCAGGCTTCTGAGGCATATGAGTTCTTTGCACAAGCTGGCTTCCCTTGCCCAGCTCTAAGAAACCCATCCGATCATTTCTTGAGGTGTATAAACTCCGATTTCGATAAGGTGAAAGCCACTCTTAAGGGATCCATGAAACTCCGGTTTGAGAGGGCTGATGATCCATTAGAGAAGATAACCACAGCGGAAGCTATCCGTACGCTTATTGATTTTTACGGCTCTTCTCATTACAATCACACAGCAAAAGAGAAAGTTGAGGAGATCTCCAAAGTTAAGGGAACTGTGCTGGATTCTGGCGGGAGTCAAGCTAGTTTCTTGATGCAAGCATTCACCTTAACCATGCGCTCATTCGTAAATATGTCAAGGGACTTTGGGTATTACTGGCTGAGGCTCGTTATTTACATCGTGGTGACTATCTGCATTGGAACAATCTACTTGAATGTCGGGACAGGCTACAATTCCATTCTGGCAAGAGGTTCATGTGCTTCTTTCGTCTTTGGCTTTGTCACATTCATGTCAATTGGAGGATTTCCTTCATTCGTTGAAGACATGAAGGTTTTCCAGAGAGAGAGGCTGAATGGTCACTATGGCGTGATTCCGTTTGTTATCAGCAACACTATCTCCGCAATGCCCTTCCTGATAATGATAACCTTCATTTCAGGAACCATCTGCTATTTCATGGTTCAGCTCCATCCAGGATTCACGCATTATCTGTTCTTTGTCTTGTGCCTATATGCAAGTGTCACAGTAGTTGAGAGCTTGATGATGGCCATAGCCAGTGTTATCCCCAACTTCCTCATGGGAATCATCATTGGAGCTGGAATCCAGGGTATTTTCATGCTTGTTTCTGGGTACTTTCGGCTCCCAAATGACATCCCAAAGCCCTTCTGGCGATACCCCATGTCTTACATCAGTTTTCACTTCTGGGCCCTACAGGGCCAATACCAAAATGATCTGAAAGGCCTGATTTTCGACAACCAGTCACCGGATCTCTTCAAGATCCCTGGAGAGTACATACTGGAAAACGTGTTCCAGATTGATGTAAACCGATCGAAATGGGTGGATCTCAGCGTTATCTTCTGCATGATTATCATCTACCGCATCATCTTCTTCATCATGATCAAGATAAATGAGGATGTGACCCCATGGATCAGAGGATACATAGCAAGGAGAAGGATGCAACAAAAGAAAATTGGAAGTCAAACTACGACAGTAACGCCGGATCGCCTTACCCAATCACCTTCCCTCAGGACCTATATAGCCAACCAGACAACAGGCACGGGAAGAAGATAG 2127 0.4711 MRNSANANHVMMEIEASKPTGSGIVVGTLSPLSETLWKEKTDTDFFGDVSARLTWKDLTVMVTLGNGETQNVLEGLTGYAEPGSLMALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDQMPWSDKRALVESTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILTRPRLLFLDEPTSGLDSASAFFVTQTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFERADDPLEKITTAEAIRTLIDFYGSSHYNHTAKEKVEEISKVKGTVLDSGGSQASFLMQAFTLTMRSFVNMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVIPFVISNTISAMPFLIMITFISGTICYFMVQLHPGFTHYLFFVLCLYASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLKGLIFDNQSPDLFKIPGEYILENVFQIDVNRSKWVDLSVIFCMIIIYRIIFFIMIKINEDVTPWIRGYIARRRMQQKKIGSQTTTVTPDRLTQSPSLRTYIANQTTGTGRR* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02247 708 ProSitePatterns ABC transporters family signature. 196 210 IPR017871 GO:0005524|GO:0016887
Eupl04g02247 708 Pfam ABC-2 type transporter 386 592 IPR013525 GO:0016020|GO:0140359
Eupl04g02247 708 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 41 674 - -
Eupl04g02247 708 SMART AAA_5 82 272 IPR003593 GO:0016887
Eupl04g02247 708 Gene3D - 47 291 IPR027417 -
Eupl04g02247 708 Pfam ABC transporter 75 224 IPR003439 GO:0005524
Eupl04g02247 708 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 53 296 IPR003439 GO:0005524
Eupl04g02247 708 FunFam ABC transporter G family member 11 47 290 - -
Eupl04g02247 708 Pfam ABC-2 type transporter 253 309 IPR043926 GO:0140359
Eupl04g02247 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 290 IPR027417 -
Eupl04g02247 708 CDD ABCG_EPDR 50 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02247 Eupl-Chr4 53290737 53295815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02247 83 257 Calmodulin-binding Proteins AT2G36910 34.239 8.39e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02247 K05681 - vvi:100263167 1240.71