Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02232 ATGCAAATTAGGGACTCTGTTACTTCTACTTTGGATTTGCATTCGAATTGGACTGGCCCGCCTTGTAACGACAATCTTAGCAATTGGATTGGGATCACCTGTTCAAATTGGCACATAATCAGCATTGTTCTTGAAGGAATTCAGTTGACAGGTTCCCTCCCACCAACATTTCTACAAAATATAACTTTCTTAAGTGAACTAAGCTTCAGAAACAATTCACTCATTGGTTTCCTTCCCAATCTAACAAGCCTTGTACACCTGCAATTCATCTCCCTATCACACAACAGCTTCTCCGGTTCAATTCCGTTCGAGTTCATCCACTTGCCGAAATTAACTCGGCTAGAGCTGCAAGAGAATTTTCTCACAGGCTATATCCCACCTTTTAATCAAACAACTTTAACAGTTTTCAATGTCTCATACAATTTCCTTGAAGGCCCCATCCCTGATACTCCTGTTCTTCAAAGATTCTCTGAGAGCTCTTACGATCACAACTCTGACTTATGCGGGAAACCGTTGGGAAAAACATGTTCCATTGTTCCTTCTGCTCCAGTTGGTGCACCACCTCCTTTCCCAAGTCCTTCGAAACCTTCGAAAGGAAAAAAACACAAGACCCTCACAGTATGGAGTATTGCTTTGATTGCAGTTGCAGCAACATTGATCCCAGTCATGGTCATGCTTGTATACTTTTGTTGCTGTAGGAAGGTGCAAGGAAAGGGAACACAGGGGCAGTACTCAGAAGAAGGTCCTGTTGAGTACACCGAAAAGAAAATGAGTACCTCAGGGAGCACAGGGGATCCTGAAAGAACAATAGAACTAGAGTTCTTCGACAGAGAAAGACCAGTCTTTGACCTAGATGATCTTTTAAGGGCTTCTGCAGAAATGATGGGGAAGGGGAAACTGGGAAGTACATATAAAGCGACACTAGAGTCGGGTTCGGTTGTTGCTGTGAAAAGAGTCAAGGAGATGAATGGGTTGAGTAAGAAGGAATTTGTTCAACAAATGCAGTTGCTAGGGAAAATGAAGCATGAGAACCTTGTAGAGATCATCTCTTTCTACTATTCCAAGGAGGAGAAGCTGGTTGTCTATGAATATGTCCCTCATGGAAGTTTGTTTGAGCTTTTACATGAGAATAGAGGAGCAGGAAGAGCACCATTGAATTGGACAACAAGACTATCAATAATCAAAGGCATAGCAAAGGGTCTCACTTACCTACACCAGTCCTTACCTTCTCACAAGGTTCCACATGCCAATCTTAAATCCTCCAATGTTCTCATCTATCACAACCACCATAATTACCATGCAAAGCTCACAGACTTTGGCTTCCTACCACTCCTCCCCTCTCGAAAATCCTCCGAAAAGCTCGCGGTCGGATGGTCGCCAGAGTTCTCTCAAGGAAAGAAGCTGACACACAAGGCCGACATCTACTGCTTCGGCATTATACTACTAGAGGTCATCACTGGTCGGAACCCAAGTGATTTCTCGCAGGGAAATGACGACGTGATAAATGATCTATCTGATTGGGTGCGATCTGTCGTTGACAATGACTGGTCTACAGATATATTGGATTTGGAAATACTAGCAGCAAAAGAAGGGCATGATGAAATGTTGAAGCTCACAGAGGTGGCTCTTGAATGTACAGCTGTAGCACTAGAGAAACGTCCGAAGATGAGCGAAGTGTTGAGAAGGATTGAAGAGATTGAGCAAGAGACAACAGAGAGAGAGATTGAAGAAGAACATGTAGCAGTCATCATGCCAAGACCAAGATTTGCCTTCGGAAGGGCCGAAGAGGCCACCCATCCTGACTCCATGCGAGCCACCTTATCGGAATTCATCTCCACCTTCATCTTCGTCTTTGCAGGAGAAGGCTCCGTCCTCGCTCTCGGTAAGATGTACAAGGACACCGGCGGCACAGCAGCATCTGGGCTGGTGGCGGTTGCAGTGGCCCATGCGTTATCCTTGTTCGTGGCGGTGGCGATCGGACTCAATGTATCTGGGGGTCACGTTAACCCTGCGGTCACCTTTGGTGCACTCGTGGGTGGCCGGATCTCGCTCCTGCGTTCCGTATATTACTGGGTGGCTCAGCTCTTGGGAGCCGTTGTAGCCTCCCTCATGTTGAGGTTCACGACGGACGGCATGAGGCCAGTGGGGTTTTCGGTGGCGTCGGGTGTGGGGGAATTGCATGGACTGGTTATGGAGATAGTGATGACGTTTGGACTGGTTTACACTGTGTATGCAACTGCAATCGATCCAAAGAGGGGTAGCTTGGGGACGATCGCACCGTTAGCTATCGGGTTTATTGTGGGAGCGAACATCCTTGCAGGAGGACCGTTTGATGGAGCATCGATGAACCCAGCTCGGGCTTTTGGGCCAGCACTAGTGGGTTGGAGGTGGAAGAACCATTGGATATATTGGGTGGGGCCTTTCATAGGAGCAGCCATTGCAGGTCTAACCTATGAGACTGCATTGATCCCAACAGAAGTCCCACGCACTCACCAGCCCTTAGCTCCTGAAGATTACTAG 2520 0.4706 MQIRDSVTSTLDLHSNWTGPPCNDNLSNWIGITCSNWHIISIVLEGIQLTGSLPPTFLQNITFLSELSFRNNSLIGFLPNLTSLVHLQFISLSHNSFSGSIPFEFIHLPKLTRLELQENFLTGYIPPFNQTTLTVFNVSYNFLEGPIPDTPVLQRFSESSYDHNSDLCGKPLGKTCSIVPSAPVGAPPPFPSPSKPSKGKKHKTLTVWSIALIAVAATLIPVMVMLVYFCCCRKVQGKGTQGQYSEEGPVEYTEKKMSTSGSTGDPERTIELEFFDRERPVFDLDDLLRASAEMMGKGKLGSTYKATLESGSVVAVKRVKEMNGLSKKEFVQQMQLLGKMKHENLVEIISFYYSKEEKLVVYEYVPHGSLFELLHENRGAGRAPLNWTTRLSIIKGIAKGLTYLHQSLPSHKVPHANLKSSNVLIYHNHHNYHAKLTDFGFLPLLPSRKSSEKLAVGWSPEFSQGKKLTHKADIYCFGIILLEVITGRNPSDFSQGNDDVINDLSDWVRSVVDNDWSTDILDLEILAAKEGHDEMLKLTEVALECTAVALEKRPKMSEVLRRIEEIEQETTEREIEEEHVAVIMPRPRFAFGRAEEATHPDSMRATLSEFISTFIFVFAGEGSVLALGKMYKDTGGTAASGLVAVAVAHALSLFVAVAIGLNVSGGHVNPAVTFGALVGGRISLLRSVYYWVAQLLGAVVASLMLRFTTDGMRPVGFSVASGVGELHGLVMEIVMTFGLVYTVYATAIDPKRGSLGTIAPLAIGFIVGANILAGGPFDGASMNPARAFGPALVGWRWKNHWIYWVGPFIGAAIAGLTYETALIPTEVPRTHQPLAPEDY* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02232 839 CDD STKc_IRAK 295 562 - -
Eupl04g02232 839 PRINTS Major intrinsic protein family signature 764 786 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl04g02232 839 PRINTS Major intrinsic protein family signature 731 749 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl04g02232 839 PRINTS Major intrinsic protein family signature 686 705 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl04g02232 839 PRINTS Major intrinsic protein family signature 801 821 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl04g02232 839 PRINTS Major intrinsic protein family signature 649 673 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl04g02232 839 PRINTS Major intrinsic protein family signature 604 623 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl04g02232 839 SUPERFAMILY Protein kinase-like (PK-like) 293 568 IPR011009 -
Eupl04g02232 839 SUPERFAMILY Aquaporin-like 596 825 IPR023271 -
Eupl04g02232 839 Pfam Protein kinase domain 293 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g02232 839 Gene3D Glycerol uptake facilitator protein. 588 829 IPR023271 -
Eupl04g02232 839 ProSiteProfiles Protein kinase domain profile. 289 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g02232 839 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 570 IPR046959 -
Eupl04g02232 839 CDD MIP 604 819 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl04g02232 839 Gene3D Phosphorylase Kinase; domain 1 256 364 - -
Eupl04g02232 839 Gene3D Ribonuclease Inhibitor 1 178 IPR032675 -
Eupl04g02232 839 FunFam Probable aquaporin TIP1-1 587 837 - -
Eupl04g02232 839 FunFam Leucine-rich repeat receptor-like protein kinase 86 178 - -
Eupl04g02232 839 Gene3D Transferase(Phosphotransferase) domain 1 365 586 - -
Eupl04g02232 839 ProSitePatterns MIP family signature. 667 675 IPR022357 -
Eupl04g02232 839 Pfam Major intrinsic protein 597 818 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl04g02232 839 NCBIfam MIP family channel protein 608 818 IPR000425 GO:0015267|GO:0016020|GO:0055085
Eupl04g02232 839 FunFam pollen receptor-like kinase 1 258 364 - -
Eupl04g02232 839 SUPERFAMILY L domain-like 18 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02232 Eupl-Chr4 52895459 52903476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02232 586 839 Major Intrinsic Protein MIP AT1G17810 72.519 2.68e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Eupl04g02232 Pkinase 2.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02232 - - vvi:100245984 779.245