Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02228 ATGGCTTCCTCAAGTGTCAACCCTGGCTACATCTCTCGGCGAATCACCCTCGCGTTTCTTCTCCTCCTTTTCCTAGCAAACCCCAGTTTTGCTATGAATGTTATCGATCGATGCTGGCGAAGTAACCCTAATTGGCGGCGAAACAGGCAACAACTTGCAAGGTGCTCCGTCGGGTTTGCAGGAAAGATGATGAACAATGTGGGTAGGGGTGTGACTCATTACACAGTGAAAGACCCCAGTGACAACCCATTGAACCCCAAGGTAGGGACGTTGAGATATGCGACGACCAAGCTTAGAGGAAAGGTCTGGATTACGTTCCAGAGGGACATGCAGATCAACCTTCAAAAACCACTTCTTGTTAGTAGCTTCACCACCATTGATGGACGAGGTGCGACTGTTCACATAGCGGGTGGGTCCGGCTTCTTGCTCCGTCAGGCAACCAATGTGATCATCCATGGCCTTCGGTTCCACCACTGCCGATCACAAGTTCCAGGTCCAGTGATGGGCCCAGGTTCGAAGATTATGCAACTAGGTCAGGTCGATGGTGATGCAATTCGCATGGTTGGATCTTCCAAGATTTGGATCGATCACAACACCCTTTATGAGTGCCAGGATGGTCTCATCGATGTCACACGCGGGTCCACTGACATCACCATCTCAAACAACTGGTTCAGGAACCATGACAAGGTGATGCTTCTAGGCCATGACGACGGGTTTGTCCAGGACAGGAATATGAGGGTAACTGTGGTATTCAACTATTTTGGTCCCGATTGCATTCAACGGATGCCAAGGGTCCGATACGGGTACGCACACGTGACAAACAATCTCTACCAAGGATGGGGGCAATATGCCATCGGCGGAAGCATGAACCCAAGCATTAGAAGCGAAGCCAATCTCTTCATAGCACCAAAATCCGGTAGCAAGGAGGTGACATGGAGACAGGATGGAAATGGAAACGGAAAGTCATGGAACTGGAAGTCAGTGAAGGATGTGTTTGTTAACGGAGCCTCTTTCATGCAAACAGGCAGCAATGGCAGCGAGGACCAGCCTATAATCGTCAACAGAGTTTCCCAATATCAGATGCTGGAGCTGTGA 1095 0.4995 MASSSVNPGYISRRITLAFLLLLFLANPSFAMNVIDRCWRSNPNWRRNRQQLARCSVGFAGKMMNNVGRGVTHYTVKDPSDNPLNPKVGTLRYATTKLRGKVWITFQRDMQINLQKPLLVSSFTTIDGRGATVHIAGGSGFLLRQATNVIIHGLRFHHCRSQVPGPVMGPGSKIMQLGQVDGDAIRMVGSSKIWIDHNTLYECQDGLIDVTRGSTDITISNNWFRNHDKVMLLGHDDGFVQDRNMRVTVVFNYFGPDCIQRMPRVRYGYAHVTNNLYQGWGQYAIGGSMNPSIRSEANLFIAPKSGSKEVTWRQDGNGNGKSWNWKSVKDVFVNGASFMQTGSNGSEDQPIIVNRVSQYQMLEL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02228 364 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Eupl04g02228 364 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Eupl04g02228 364 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Eupl04g02228 364 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Eupl04g02228 364 PRINTS Pollen allergen Amb family signature 323 347 IPR018082 -
Eupl04g02228 364 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Eupl04g02228 364 SMART amb_all 109 306 IPR002022 -
Eupl04g02228 364 Gene3D - 32 361 IPR012334 -
Eupl04g02228 364 PANTHER PECTATE LYASE 18-RELATED 30 348 IPR045032 GO:0030570
Eupl04g02228 364 Pfam Pectate lyase 120 300 IPR002022 -
Eupl04g02228 364 SUPERFAMILY Pectin lyase-like 55 342 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02228 Eupl-Chr4 52854491 52856058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02228 63 314 Polysaccharide Lyase AT5G09280 67.857 4.25e-136 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02228 K01728 - nnu:104594849 558.14