Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02209 ATGGAACAAGAAAGATGTGAGGAAAGTATACCGGATTTCACGAGTGGAAGTATTCCTCCTGCAATGAAGAAATCAAGTGCTTCATTTGCTGCCCTTGTCCAAAGCATGGATATTGTTGAAGACCAAGATTCAGTGAGTAACCTTGCATCTCCGACTCCGGAGAGGACAATCCAGCCTTCAAGGAGTAAGAAGAAAGGAATTGCCTTACCTGTAAAGGTAGTCAAACAACTTTCGAAGGATTTTCAGAATGAAGATGGCATCACCGAAGGTGCAGCAGTCGAACTTCCTGACAAATACAAGACAATAGCTGAGTTCTTTGATCGTATAGGGAGTTCTGTTAGGTTGCTCAGTTTGCGTAAGAAGTTGCCTACTTTCCAAAATATTTGCACTCAGGTGGAAGTACTGACCAAAAGGAAGTTGTCATATAACCATCTCGCACAAATAAAATACATACTTCCAGAAGCCATTCAGATTGAGAAGATCCTCACACACGACGAGAAAACCTTGTGCATGGAGTCAGACATGAAAGTTACTCTACTATTGGATGCCGTAGAAGCTAATCCGGAACAATCTGCATTTATGGCTCTACGCCAAGTTTTCCATGCAAGGCTCTTAAATTTCTTCAACAGCCATCCTGAGGGCTGTGACATCCCAGAGGCCACGTTACCGGAGCCATTTAGCCAAAGAAATCAGGCTGTTCTTCCAGAGCCGTTGCTTGTCAGATCATCCATAAAATCTCATCCAACTTCCATTGAGCGTGAGCCTTTATCAAACTCATCCCATTTATCTCCATCTTTCAGCAGACGCTTTTCTCAAAAGATTATTGTTCCAGAAACCGAAAAGACTCGACTCTTAGCATCCCCAGTCCTTCTCTTACCTGTAAACTCTGGTGTTGAAACTAAGCAAGATATCAAATGCCCGCAGCAAAAAGAATCTTCTTCTTTAGTTTCCAAATCCACCAGCATTGAGTCCCCTGCTGAACTGATCTTCAGTTCCCAAAGCTTCATAAATTCAGGTGCTTGTGCAAACTCTCCTGTGAAGGATGTTTCCGTTTCACATCAATTGATGTTAGAAACACCAGTGCAGCCAACACCTCCAAGGAGACAAGTGCCCAATTCTGATGACAAGATAAACACCAAGACTAGGACGTCAAGCCATGCAACTGCAAAGAAGTCGTTAAACTTCATCTCGCCCTTGAAAGGTGATGAAAGTTCTTCAAGCTCTATTATAGATGAGTCAAAACAGTACAGGGATAACAGCCTTCAGACTGCAGCAACAAAGAGGATTCTTCTGGAAGACGATGTCACCACCTATCCTTCTGCGCTTGTCCAAATGGTAGAGGAAAATAAGGATTGCATGATGAGTCAAATAGGTTTAGTAGAGCGCCGACAGATGCTTGCTTCCTTGCCTGAACTCTTCAATCTGATTCACCATATATTTCAGTCTGCTAACTGCTTGCCAATCACAAAACAGGAGCTTGTTCACAAGATAATCTTAAATAATTGTGACATTGTTGAGATAAGAGAAGTTGAAGAACAGCTTGAGCTATTGGAAGAGTTAGTTCCAGATTGGATTTGCAGTAGATTAGTACCTAGTGGGGATCTTTGCTTCAGGTTGGTACATCATTTTTATCTTATGGATGGAGTGGGTTTAAGTAACGTGGCTGCATGGAACTTCATGCTTCCGCACCTGTTCTGCTGA 1701 0.4256 MEQERCEESIPDFTSGSIPPAMKKSSASFAALVQSMDIVEDQDSVSNLASPTPERTIQPSRSKKKGIALPVKVVKQLSKDFQNEDGITEGAAVELPDKYKTIAEFFDRIGSSVRLLSLRKKLPTFQNICTQVEVLTKRKLSYNHLAQIKYILPEAIQIEKILTHDEKTLCMESDMKVTLLLDAVEANPEQSAFMALRQVFHARLLNFFNSHPEGCDIPEATLPEPFSQRNQAVLPEPLLVRSSIKSHPTSIEREPLSNSSHLSPSFSRRFSQKIIVPETEKTRLLASPVLLLPVNSGVETKQDIKCPQQKESSSLVSKSTSIESPAELIFSSQSFINSGACANSPVKDVSVSHQLMLETPVQPTPPRRQVPNSDDKINTKTRTSSHATAKKSLNFISPLKGDESSSSSIIDESKQYRDNSLQTAATKRILLEDDVTTYPSALVQMVEENKDCMMSQIGLVERRQMLASLPELFNLIHHIFQSANCLPITKQELVHKIILNNCDIVEIREVEEQLELLEELVPDWICSRLVPSGDLCFRLVHHFYLMDGVGLSNVAAWNFMLPHLFC* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02209 566 PANTHER DNA REPLICATION FACTOR CDT1 48 539 IPR045173 GO:0003677|GO:0030174|GO:0071163
Eupl04g02209 566 SMART CDT1_2 95 224 IPR014939 -
Eupl04g02209 566 Pfam DNA replication factor Cdt1 C-terminal domain 450 525 IPR032054 -
Eupl04g02209 566 SUPERFAMILY "Winged helix" DNA-binding domain 92 226 IPR036390 -
Eupl04g02209 566 MobiDBLite consensus disorder prediction 382 411 - -
Eupl04g02209 566 MobiDBLite consensus disorder prediction 1 22 - -
Eupl04g02209 566 CDD Cdt1_m 94 225 IPR014939 -
Eupl04g02209 566 Gene3D - 459 545 IPR038090 -
Eupl04g02209 566 MobiDBLite consensus disorder prediction 358 411 - -
Eupl04g02209 566 MobiDBLite consensus disorder prediction 44 63 - -
Eupl04g02209 566 Pfam DNA replication factor CDT1 like 95 168 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02209 Eupl-Chr4 52622821 52638741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02209 91 539 Core DNA Replication Machinery Family AT3G54710 28.452 3.98e-50 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02209 K10727 - psom:113303456 484.567