Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02206 ATGGCGGGAGCATCGTCCAATTCTAACGCTCCAAGAGCAAGAAAGAGGGTAGAAGTAGAGACAAGTTCGCTAAAACGCGCCAAGGATGGAAGCGCTTTCACCAGATGTGAAGAGTGTAAAAAAGATGTTCCGGTGGTGCTCATCAATATGCACAATTGCAGCCTTGAATCTAAGATCAAGATGAATTTGGAATCTCATGTCGTGGAAAAGGTTACAGAAGCAAAGAAACCAGCAGAAAGGAAGAAAGTTTTGTCATTAGAACCAAAAACAAAAAAGAGTAAGAAAGTGAAGGATCCCAACATGCCAAAGCGTCCTCCAACTGCCTTCTTCCTCTTCCTGGATGACTTTAGAAAATCATACAAGGAAAAGAATCCAGACTCAAAGAGTGTTTCAGTGGTTGCAAAGGAAGGTGGTGAGAAGTGGAAGTCTATGACAGATGAAGAGAAGAAGCCTTATTTGGATAGAGTTGCAGAGCTAAAAGCAGAGCATGTCAAAGCTTTGGAAAAATTTAATGCTGAAAATGGAGAAGAAGAGGCTGGTTCAGAGAAAGAAGAGTGA 558 0.4176 MAGASSNSNAPRARKRVEVETSSLKRAKDGSAFTRCEECKKDVPVVLINMHNCSLESKIKMNLESHVVEKVTEAKKPAERKKVLSLEPKTKKSKKVKDPNMPKRPPTAFFLFLDDFRKSYKEKNPDSKSVSVVAKEGGEKWKSMTDEEKKPYLDRVAELKAEHVKALEKFNAENGEEEAGSEKEE* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02206 185 Pfam HMG (high mobility group) box 102 170 IPR009071 -
Eupl04g02206 185 Gene3D High mobility group box domain 86 183 IPR036910 -
Eupl04g02206 185 CDD HMG-box_AtHMGB1-like 103 162 - -
Eupl04g02206 185 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 12 182 - -
Eupl04g02206 185 MobiDBLite consensus disorder prediction 73 101 - -
Eupl04g02206 185 MobiDBLite consensus disorder prediction 13 31 - -
Eupl04g02206 185 MobiDBLite consensus disorder prediction 1 31 - -
Eupl04g02206 185 SUPERFAMILY HMG-box 85 171 IPR036910 -
Eupl04g02206 185 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Eupl04g02206 185 SMART hmgende2 101 172 IPR009071 -
Eupl04g02206 185 MobiDBLite consensus disorder prediction 73 103 - -
Eupl04g02206 185 MobiDBLite consensus disorder prediction 122 145 - -
Eupl04g02206 185 FunFam HMG type nucleosome/chromatin assembly factor 97 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02206 Eupl-Chr4 52595097 52596713 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Eupl04g02206 HMG_box 3.8e-19 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02206 K25507 - msin:131236809 261.536