Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02201 ATGCCAGGCCATGTGGATCCTCTTCACAATCTCTTTAATTTTACCCGGAGATGTTGCTCTTTTCTGAGAGAATGGCTTTGCAGCTTAGTTTTGAGACGCTGCACGGCCCTGATTGGGACACTAGTCAGGAACTCTCCTTCTAAGTTTATTGCAGAAAGGGAAAGTCATTCAGCTTTTACGGCTCCAATGGATCCTATAGATATAACGTCTTCAGATAGCGAAAATGAAATAGAAGTTGGAACGGAAAAGGAAACATCAATTCCAATAGGCTATGCTGCTTCTGCTAATCCCAGGAAGCTTCCGTCATGGGCTTCTACCTCCAGCTCAAATTCAAAGGGTTACATTGGATCATCTCAAAACCTTTCATTGCTTAAAAGAGCATCTGCTTCTACTGAGAGGCTTATAGATCATAACCACCCTTCACAGGTTAAACTCCAGATGTATCCAAGTTTTACTGACAAGGAAAAAACTTCAAACCAGCATACTGCTGTGACAGATGATCTAAAATATTTCACATCTAATGGGAGCATAGCTCAGCCAGTGAATGGTACAGGCATCGAAAATCTTGATGGGCTTTTTGATTCCAACTTCCCGGACATGTCTGGCTTCGATTCTGGAATGCTTTCATCCCAACAAAGGCTGAGGACTCTTCCACCTTCTTTTCAACCATCTGTGTCAACTACTAAATTAAAAGATTCTATGGAAAATGGGGGTGGTGGTCAGATTCCTGATAATCGCGGCAAATCTTATCTTTCTGTGGGTACAAATGTAATTGATCACAAGTTTTACATGAAAGATCATTTAAGCAGGGGAAATGATGATGAAGTTATTATGTATGAGCATAGTGGAAGTAGGATCCTACCTCCGTCTTTGATGCATGGGAAATCTCTTACTAATTCACAAATTGCTAGTTTAAGTGATCCTCCATATCGTTCAGGAGTAGAAGAAAGGCCTACAGAAAATGATGAAAGACTAATTTATCAAGCAGCATTACAGGATCTTTCACAGCCAAAAATAGAAGCTTCCTTACCTGATGGTCTTTTGGCAGTCTCTCTCTTAAGACACCAGAAAATTGCCTTAGCATGGATGGTTCAGAAGGAGACAACAAGTCTGCACTGTTTAGGTGGAATTCTAGCAGATGATCAGGGCCTTGGTAAGACTATATCAATGATTGCCCTTATACAGATGCAGAGGCATTTACACTCAAAATCAACATCAGGTGATCAAGGGGCTATCAAAACTGAAGCCTTGAATTTGGATGATGATGATGAAGGCATTTCTGAATTGGAAAAAGTAAAGCAGATTGGAGAATCTGACAATCTTAGAAGGACTCCGGTGAGTACTGCTGTACCTGCATTCCACAAAGGGAGGCCAGCAGCAGGTACATTGGTTGTATGCCCAGCAAGTGTTCTTCGTCAGTGGGCTAGGGAGTTGGATGACAAGGTTACAGATAATGCTAAGCTTTCTGTTTTAATTTATCATGGAAGCAGTAGGACGAAAGATCCTGTTGAGCTGGCAAAATATGATGTAGTTCTCACAACATATTCTATTGTGACTAATGAAGTTCCGAAGCAACCTCTAGTTGACGATGATGATGGAGATTCAAAAAATGGGGAAAAGTATGGATTATCTTCAGAATTTTCCATCAATAAAAAAAGGAAAAAGATGTCTAATGCTGGTAAGAAAGGGAAGAAGGGTAGGAAGGGAATTGATGGTTCTTCTATTGATTGCGATAGTGGTGCACTTGCAAGGGTGGGCTGGTTTAGGGTGATTTTAGATGAAGCTCAAACCATAAAAAACCACAGAACTCAAGTGGCTAGAGCCTGCTGTGGTCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATACAAAATGCAATTGATGATCTGTATAGCTACTTTAGATTTCTGAAATATGACCCATATTCTGTCTACAAAACTTTCTGTTCTGCGATAAAGTTCCCAATATCCAGAAACTCAAGTACTGGTTACAAGAAGCTTCAAGCCGTTCTGAAGACGATAATGCTGCGTCGCACAAAAGGAACGCTGCTTGATGGGGAGCCTATTATTAATTTACCACCAAAATCAATACATTTGACGAAGGTGGAGTTCTCTAATGAGGAGCGGGCTTTCTATTTGAAGCTGGAAGCAGATTCACGCTCACAGTTTAAGGCATATGCCGCAGCTGGCACAGTGAACCAAAACTATGCAAATATTCTGTTGATGCTTTTGCGTCTTCGTCAAGCGTGTGATCACCCTCTTCTTGTTAAAGGATATCATTCTGATTCTGTTGGAAAAGCTTCCTTAGAGATGGCAAGAAGACTCCCTACGGATATGCTAATCAATTTATTGAATCTCTTGGAATCTTCTTTGGAAATTTGTGGTGTATGCAGTGACCCACCTGAGGATGCTGTTGTTACAATGTGTGGCCATGTCTTCTGCTATCAGTGTGTATCTGAATATCTAACGGGTGATGACAATATGTGCCCTGCACTTGAATGCAAAGAACAACTGGGTTCCGATGTTGTTTTTTCTAAAGCTACTCTAAGAAGTTGTATTTCAGATGATCTTGATAGTAATGCCACGACTTCTGAAGCTGCAGACAAATCTTTAGTTCTGCAGAATACGTATGGTTCTTCTAAAATCAGAGCTGCTCTTGAGATCCTGCAGACACATTGTAAATTGAGGAACCCAAATACGGAACTTAATTCCGAGGGATGCAATGGAATTTCTTATTCTTCAGAAGCTGCATACTCAGAGTTTTGTCACTCTGATGTTAATGCTGTGACACACACATCAGAGTATATAAACTCTGAATCGGAAGGACCAGTCAAGGCTATTGTTTTCTCCCAGTGGACTAGCATGCTCAACTTAGTTGAAAATTCATTGAACCAATCTTGTATACAATACAGGAGACTCGATGGGACAATGTCCCTGGCCTCAAGAGACAAGGCTGTGAAAGATTTCAACAATGATCCAGAGGTGACTGTAATGCTGATGTCTCTTAAAGCAGGAAACCTTGGTCTAAACATGGTTGCTGCTTGTCATGTTATTCTTCTGGATCTCTGGTGGAATCCAACCACCGAAGATCAAGCTGTTGATCGAGCACATAGAATTGGGCAGACTCGTCCTGTAACGGTTTCACGAATAACTATTAAAGACACAGTAGAAGATCGGATATTAGCTCTCCAGGAAGAAAAGAGGAAAATGGTTGCATCCGCTTTTGGGGAAGATCAAACGGGGGGCTCTGCAACTCGGCTTACAGTAGAAGATCTCAAGTATCTTTTCATGGTCTGA 3303 0.413 MPGHVDPLHNLFNFTRRCCSFLREWLCSLVLRRCTALIGTLVRNSPSKFIAERESHSAFTAPMDPIDITSSDSENEIEVGTEKETSIPIGYAASANPRKLPSWASTSSSNSKGYIGSSQNLSLLKRASASTERLIDHNHPSQVKLQMYPSFTDKEKTSNQHTAVTDDLKYFTSNGSIAQPVNGTGIENLDGLFDSNFPDMSGFDSGMLSSQQRLRTLPPSFQPSVSTTKLKDSMENGGGGQIPDNRGKSYLSVGTNVIDHKFYMKDHLSRGNDDEVIMYEHSGSRILPPSLMHGKSLTNSQIASLSDPPYRSGVEERPTENDERLIYQAALQDLSQPKIEASLPDGLLAVSLLRHQKIALAWMVQKETTSLHCLGGILADDQGLGKTISMIALIQMQRHLHSKSTSGDQGAIKTEALNLDDDDEGISELEKVKQIGESDNLRRTPVSTAVPAFHKGRPAAGTLVVCPASVLRQWARELDDKVTDNAKLSVLIYHGSSRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVDDDDGDSKNGEKYGLSSEFSINKKRKKMSNAGKKGKKGRKGIDGSSIDCDSGALARVGWFRVILDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYSVYKTFCSAIKFPISRNSSTGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKSIHLTKVEFSNEERAFYLKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKGYHSDSVGKASLEMARRLPTDMLINLLNLLESSLEICGVCSDPPEDAVVTMCGHVFCYQCVSEYLTGDDNMCPALECKEQLGSDVVFSKATLRSCISDDLDSNATTSEAADKSLVLQNTYGSSKIRAALEILQTHCKLRNPNTELNSEGCNGISYSSEAAYSEFCHSDVNAVTHTSEYINSESEGPVKAIVFSQWTSMLNLVENSLNQSCIQYRRLDGTMSLASRDKAVKDFNNDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVSRITIKDTVEDRILALQEEKRKMVASAFGEDQTGGSATRLTVEDLKYLFMV* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02201 1100 Gene3D - 444 531 IPR038718 -
Eupl04g02201 1100 SMART ultradead3 348 659 IPR014001 -
Eupl04g02201 1100 SMART ring_2 796 834 IPR001841 -
Eupl04g02201 1100 MobiDBLite consensus disorder prediction 552 571 - -
Eupl04g02201 1100 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 561 692 - -
Eupl04g02201 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 680 IPR027417 -
Eupl04g02201 1100 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 443 531 - -
Eupl04g02201 1100 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 110 1099 - -
Eupl04g02201 1100 MobiDBLite consensus disorder prediction 217 234 - -
Eupl04g02201 1100 Pfam Zinc finger, C3HC4 type (RING finger) 796 832 - -
Eupl04g02201 1100 CDD DEXDc_SHPRH-like 352 680 - -
Eupl04g02201 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 846 IPR013083 -
Eupl04g02201 1100 ProSiteProfiles Zinc finger RING-type profile. 796 832 IPR001841 -
Eupl04g02201 1100 Gene3D - 695 1099 IPR027417 -
Eupl04g02201 1100 SUPERFAMILY RING/U-box 794 855 - -
Eupl04g02201 1100 CDD SF2_C_SNF 936 1051 - -
Eupl04g02201 1100 MobiDBLite consensus disorder prediction 217 248 - -
Eupl04g02201 1100 ProSitePatterns Zinc finger RING-type signature. 811 820 IPR017907 -
Eupl04g02201 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 688 1099 IPR027417 -
Eupl04g02201 1100 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 367 642 IPR014001 -
Eupl04g02201 1100 SMART helicmild6 959 1042 IPR001650 -
Eupl04g02201 1100 Pfam SNF2-related domain 359 757 IPR000330 GO:0005524|GO:0140658
Eupl04g02201 1100 Gene3D - 326 412 IPR038718 -
Eupl04g02201 1100 Gene3D - 546 693 IPR038718 -
Eupl04g02201 1100 Pfam Helicase conserved C-terminal domain 937 1042 IPR001650 -
Eupl04g02201 1100 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 932 1095 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02201 Eupl-Chr4 52519737 52550186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02201 174 1000 RAD5 or RAD16-like Gene Family AT1G50410 58.038 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl04g02201 SNF2_N 5.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02201 - - cave:132183883 1366.67