LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl04g02199	ATGGAAGAAGAAACCCTAATTGATGAAGATTTCCCTCTCTTCTCCAAGAACTTCACCCCAAAACCTTCCAGAGAACCCTCCTCAGTATCCCAAAACCCTCCTCTTCTTCGCCCCCAAAAATTGGAAAAATCGACCGACCACGACTCAAATTCAAGCAGTTTCTCTGATCTCGGCCTCGCCGAGTGGGCGATTCAGACCTGTAAGGAGCTCGGCATGAAGAAACCCACTCCCGTTCAACAGCAATGCATTCCTCGAATTCTCTCCGGTAACGATGTTCTGGGGATAGCTCAGACAGGTAGCGGGAAGACGGCCGCCTTTGCATTGCCGATCTTGCATCGCCTCGCTGAAGATCCCCATGGTGTGTTTGCGTTAGTGCTGACGCCGACGAGAGAGCTGGCGTACCAATTGGCGGAGCAGTTTAGGGCGCTCGGATCCTGCTTGCACCTCCGCTGCGTCGTTGTTGTTGGAGGGATGGATATGATCAACCAGGCGCAAGCACTGATGCAACGCCCTCACGTCGTAATCGCTACACCAGGGAGGGTTAAGGTCCTCCTTGATCAAAGTCCAGATATCCCTGCAGTGTTCTCCAAGACTAAGTTTCTAGTTTTGGATGAAGCAGATAGGGTTTTGGATGTTGGTTTTGAGGAGGAACTGAGAGTGATTTTTCAGTGCTTGCCCAAAGATCGACAAACTCTTCTGTTTTCTGCAACAATGACGAGCGACCTACAAACATTGCTTGAGCTTTCTGCAAATAAGGCATACTTTTACGAGGCATATGAGGGGTTTAAGACAGTTGAATCTCTCAAGCAACAGTATGTTTTTATTCCCAAAAATGTGAAGGATCTTTATCTCCTACACATTTTTTCAAAAATGGAGGATATGGGTATTCGCTCTGCCATCATATTTGTTTCTACATGCAGGAGCTGTCACCTTCTGAGTTTATTATTGGAAGAGCTTGATCAAACAGCAGTGGCATTGCATTCACACAAGTCCCAGTCTCTGAGGCTTGCTGCACTACATCGATTCAAATCTGGTCAGGTTCCTATTTTGCTGGCAACAGATGTAGCCAGTCGTGGTTTAGACATTCCAACAGTTGATCTTGTTATCAACTATGATATTCCAAGGTATCCACGGGACTACGTTCATCGTGTGGGGCGTACTGCAAGAGCTGGCAGAGGAGGGTTGGCTGTGAGCTTTGTTACGCAGAACGACGTAGATCTTATTCATGAAATAGAGGCAGTTGTTGGAAAACAATTGGACAAGTTTGAATGTAAAGAGAACGAGGTTCTTACTGATATCACAAAGGTTTACAAGGCCAAACGTGTGGCAACGATGAAGATGATGGACGATGGCTTTGAAGAGAGAGCAAAAGCACGGAAAACCCAGAAGTTGAAAACATTAGCAGAGAAAGGATTATTGAAGAAAAGGAGTAAAAAGAGAAAAAGAGCAGGACTTGCTAAAGAGTAG	1467	0.4608	MEEETLIDEDFPLFSKNFTPKPSREPSSVSQNPPLLRPQKLEKSTDHDSNSSSFSDLGLAEWAIQTCKELGMKKPTPVQQQCIPRILSGNDVLGIAQTGSGKTAAFALPILHRLAEDPHGVFALVLTPTRELAYQLAEQFRALGSCLHLRCVVVVGGMDMINQAQALMQRPHVVIATPGRVKVLLDQSPDIPAVFSKTKFLVLDEADRVLDVGFEEELRVIFQCLPKDRQTLLFSATMTSDLQTLLELSANKAYFYEAYEGFKTVESLKQQYVFIPKNVKDLYLLHIFSKMEDMGIRSAIIFVSTCRSCHLLSLLLEELDQTAVALHSHKSQSLRLAALHRFKSGQVPILLATDVASRGLDIPTVDLVINYDIPRYPRDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVVGKQLDKFECKENEVLTDITKVYKAKRVATMKMMDDGFEERAKARKTQKLKTLAEKGLLKKRSKKRKRAGLAKE*	489

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl04g02199	488	SMART	ultradead3	71	271	IPR014001	-
	Eupl04g02199	488	MobiDBLite	consensus disorder prediction	1	54	-	-
	Eupl04g02199	488	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	267	430	IPR001650	-
	Eupl04g02199	488	MobiDBLite	consensus disorder prediction	20	38	-	-
	Eupl04g02199	488	CDD	DEADc_DDX49	54	257	-	-
	Eupl04g02199	488	MobiDBLite	consensus disorder prediction	472	488	-	-
	Eupl04g02199	488	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	120	410	IPR027417	-
	Eupl04g02199	488	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	52	80	IPR014014	GO:0003724
	Eupl04g02199	488	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	83	256	IPR014001	-
	Eupl04g02199	488	SMART	helicmild6	310	391	IPR001650	-
	Eupl04g02199	488	Pfam	Helicase conserved C-terminal domain	296	391	IPR001650	-
	Eupl04g02199	488	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	38	480	-	-
	Eupl04g02199	488	Pfam	DEAD/DEAH box helicase	76	244	IPR011545	GO:0003676\|GO:0005524
	Eupl04g02199	488	MobiDBLite	consensus disorder prediction	469	488	-	-
	Eupl04g02199	488	CDD	SF2_C_DEAD	268	400	-	-
	Eupl04g02199	488	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	202	210	IPR000629	-
	Eupl04g02199	488	Gene3D	-	31	257	IPR027417	-
	Eupl04g02199	488	Gene3D	-	263	486	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl04g02199	Eupl-Chr4	52501085	52509122	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl04g02199	45	412	Eukaryotic Initiation Factors Gene Family	AT1G72730	36.043	1.24e-63	210

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl04g02199	K14778		-	nnu:104599654	785.023