Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02195 ATGAGTACCGATGAGACGATGGGCAGTAGCTCCTTGTGGAGTAGGGAGCAGGAAAAGGCTTTCGAGAATGCCCTAGCGGATAATCCTGAGGATTCTACTGATCGGTGGGAGAAGATTGCCGCGGTTGTACCTGGGAAAACCCCAGAAGAGATCGAACATCATTACGAACTCTTAGTCGAAGATATCAACGGGATTGAGTCTGGGCGTGTGCCTTTGCCTTGCTATGTTTCTTCTTCAGAGGGTTCAACAGACCATGCAGGCGAGGCCGGGATTGGTAAAAAGGGCAGCCATCTTGGGCATTTTCAGAGTGATTCCAATCAGGGAGGAAAGGCATCAAGGTCAGATCAAGAACGCCGTAAGGGCATAGCGTGGACAGAGGATGAACACAGGTTATTTCTTCTTGGGTTGGATAAATATGGTAAAGGCGATTGGCGGAGTATATCACGGAACTTTGTGGTGTCGAGGACACCTACACAGGTGGCCAGCCACGCACAGAAGTATTTCATTCGCTTGAACTCAATGAACAAGGATAGAAGACGATCAAGTATCCATGATATCACTAGCGTGGGCAGTGGAGAGGTATCAACACCCCAAGGGCCAATCACTGGTCAAACAAATGGGCCCACTGCCGGAGGCTCCTCAGGTAAATCCTCCAAACAACAACCTCAGCCCTCAGCTCCTGGAGTTGGCGGGTATGGTGCTACTACCATAGGCCAACCAATTGGAGGGCCTCTCATTTCAGCAGTCGGCACTCCAGTGAATCTTGCTGCCCCAGCACACATGCCATACGGTGTACGAGCCCCAGTCCCTGGACCCATAGTTCCTGGTGCCCCAGCGAACATGACTCCCATGACATACCCAATGCCCCATGCATCTGCTCATAGGTGA 888 0.5146 MSTDETMGSSSLWSREQEKAFENALADNPEDSTDRWEKIAAVVPGKTPEEIEHHYELLVEDINGIESGRVPLPCYVSSSEGSTDHAGEAGIGKKGSHLGHFQSDSNQGGKASRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGSGEVSTPQGPITGQTNGPTAGGSSGKSSKQQPQPSAPGVGGYGATTIGQPIGGPLISAVGTPVNLAAPAHMPYGVRAPVPGPIVPGAPANMTPMTYPMPHASAHR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02195 295 MobiDBLite consensus disorder prediction 76 121 - -
Eupl04g02195 295 SUPERFAMILY Homeodomain-like 13 65 IPR009057 -
Eupl04g02195 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 170 IPR006447 GO:0003677
Eupl04g02195 295 ProSiteProfiles SANT domain profile. 124 172 IPR017884 -
Eupl04g02195 295 MobiDBLite consensus disorder prediction 1 17 - -
Eupl04g02195 295 MobiDBLite consensus disorder prediction 185 225 - -
Eupl04g02195 295 FunFam transcription factor MYB1R1 122 173 - -
Eupl04g02195 295 CDD SANT 13 59 IPR001005 -
Eupl04g02195 295 ProSiteProfiles Myb-like domain profile. 13 59 IPR001005 -
Eupl04g02195 295 PANTHER TRANSCRIPTION FACTOR KUA1 9 290 - -
Eupl04g02195 295 SMART sant 9 61 IPR001005 -
Eupl04g02195 295 SMART sant 120 170 IPR001005 -
Eupl04g02195 295 MobiDBLite consensus disorder prediction 20 35 - -
Eupl04g02195 295 MobiDBLite consensus disorder prediction 178 235 - -
Eupl04g02195 295 CDD SANT 123 168 IPR001005 -
Eupl04g02195 295 Pfam Myb-like DNA-binding domain 13 55 IPR001005 -
Eupl04g02195 295 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Eupl04g02195 295 FunFam Transcription factor SRM1 5 72 - -
Eupl04g02195 295 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Eupl04g02195 295 Gene3D - 122 174 - -
Eupl04g02195 295 Gene3D - 5 72 - -
Eupl04g02195 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 172 IPR017930 -
Eupl04g02195 295 ProSiteProfiles SANT domain profile. 8 63 IPR017884 -
Eupl04g02195 295 MobiDBLite consensus disorder prediction 1 35 - -
Eupl04g02195 295 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02195 Eupl-Chr4 52406378 52420634 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g02195 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02195 - - msin:131242884 475.707