Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02190 ATGCAGAGTGGTGTTGCAGAAAATGAAGTTAGGGTTAAGAGATATCCTCCTTCGTTTCCTCCTCCATCTTCTTCTTCTTACTCTGCTTCCGTTACTTCGGCTGTTAATTCTTCGATTCCGCTGGTTCCGCGGATCGATGATGATGATCATGTGGAAGAGAAGCCAAAGATCAATGGAATTGGAGAACGGGTGATTGATGAGCAGATCGATAAAAGAAACCTCGCAAGATCTAGGATTCCGGTTCCGAGCTTGATTTCTGTTACGGCGGAGACAGCGGAGGCGTCTTTGATGAATTTCGCGCAGAGCTATCGGGTTGGAGGAGCGGGGGAGGCGATCAAAGCTGAGCAGGCTGTGAAAGTCAACCGGAATGTAGCCGTTCCGGCAGTAGCAGCGGTGCCGGTGTTACAGTCGCAACCAGGATTGATTCAACTTGGGACCGAGCTTACTCCCATCTTTCCTGGGGCGAATAATTCATGGGGCCCACAACCTGTAGGAAATCCATATCAATTTCACTGCTTTCCGTACAATAATACGCGTGTTTCAAGTGCTACAGCATCAAATTTGAAGAGGAAGGCTGAGGTCTCCGATAACTTTTACAATCCCACACAAATGGAAACCTTCGTAGGCCACATGCCAGGCGGCTTTTTTCAAGATTCAGTGTTTCATAGTAGCTTTGTGCCTGTTCAAGCAGTGTTCCAGAATCCTTTCTTTCCCACAGCGGCAAGGGGTCCACCCATGAACTACTCTGTGTCTGCACCCCTCAATCTTGAAGCAACTAATAATCAGGAAAGGAATGTTTTCACAACTTCTCGGTTTCCAAGGAATGGAAATTCATTGGGTGGTAGTGCCTCAGTACCGATGCACAAAAGGAAAGTTGTTCGTCCGAGTTGCTCGAGCGGCACGAGCATGACTGTAGTTTCAGATGGAAATAGGAATGCCAAGTTAAAACCTTCAGCTGAAAATGGGTTTCCCCCCTTGCGGGAACATAATGTATTGGACGCTACTCAAAACACAAGGTCATCTCTCATTTCCACCAGCTCTGAGCCTCAGCCTGGATATATTCCTTCAGCAAGTTCGTATAGAACTGTGGATGAGAAGGAGATCGATGGGAAGGGTTGGATGGTACTTGTGCAGAAAGAGTTGCGGAACACTGATGTTGGTAACCTGGGAAGAATCGTGCTTCCAAAAAAGGATGCAGAGGCAAATCTTCCTCCCTTAGTTGCAAAAGATGGACTTATTCTACAAATGGAGGACATGACATATTCAGTTAATTGGAAATTCAAGTATAGGTACTGGCCAAACAATAAAAGTAGGATGTATGTTATGGAGAATACAGGTGATTTTGTAAGAATGCATAACCTTCAAACTGGCGATTTTTTTATAGTTTACAAAGAAGAGAGCTCTGGAAAATATATTGCTCGTGGTAAGAAGGGAGTGGGATCATTTTATGATGGAGATATGGTTCGACCAGAGGACCATAGCAGATCAGAGAAAGGAGAAACAGAGGAGAATGCCCAGCTTGGTCCAGAGCAAGGATCCTCGGTACCTAGTGACGGTTATATGGACTCAAAGGCTGAATCTGATGCTTTTGCAACAGGGCAGCCATTTGATTTTGAGAGAGATACTGATGGGCCATCTGAGTTCATTCCACCATCTTTACAAGATCTTGATCCAGAGGGTATCCCATGA 1689 0.4553 MQSGVAENEVRVKRYPPSFPPPSSSSYSASVTSAVNSSIPLVPRIDDDDHVEEKPKINGIGERVIDEQIDKRNLARSRIPVPSLISVTAETAEASLMNFAQSYRVGGAGEAIKAEQAVKVNRNVAVPAVAAVPVLQSQPGLIQLGTELTPIFPGANNSWGPQPVGNPYQFHCFPYNNTRVSSATASNLKRKAEVSDNFYNPTQMETFVGHMPGGFFQDSVFHSSFVPVQAVFQNPFFPTAARGPPMNYSVSAPLNLEATNNQERNVFTTSRFPRNGNSLGGSASVPMHKRKVVRPSCSSGTSMTVVSDGNRNAKLKPSAENGFPPLREHNVLDATQNTRSSLISTSSEPQPGYIPSASSYRTVDEKEIDGKGWMVLVQKELRNTDVGNLGRIVLPKKDAEANLPPLVAKDGLILQMEDMTYSVNWKFKYRYWPNNKSRMYVMENTGDFVRMHNLQTGDFFIVYKEESSGKYIARGKKGVGSFYDGDMVRPEDHSRSEKGETEENAQLGPEQGSSVPSDGYMDSKAESDAFATGQPFDFERDTDGPSEFIPPSLQDLDPEGIP* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02190 562 SUPERFAMILY DNA-binding pseudobarrel domain 377 471 IPR015300 -
Eupl04g02190 562 Gene3D - 367 479 IPR015300 -
Eupl04g02190 562 ProSiteProfiles B3 DNA-binding domain profile. 377 479 IPR003340 GO:0003677
Eupl04g02190 562 MobiDBLite consensus disorder prediction 1 29 - -
Eupl04g02190 562 Pfam B3 DNA binding domain 378 469 IPR003340 GO:0003677
Eupl04g02190 562 MobiDBLite consensus disorder prediction 486 504 - -
Eupl04g02190 562 SMART B3_2 377 477 IPR003340 GO:0003677
Eupl04g02190 562 MobiDBLite consensus disorder prediction 506 520 - -
Eupl04g02190 562 MobiDBLite consensus disorder prediction 294 326 - -
Eupl04g02190 562 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 153 478 IPR044800 GO:0003700
Eupl04g02190 562 MobiDBLite consensus disorder prediction 295 311 - -
Eupl04g02190 562 MobiDBLite consensus disorder prediction 338 357 - -
Eupl04g02190 562 CDD B3_DNA 378 472 IPR003340 GO:0003677
Eupl04g02190 562 MobiDBLite consensus disorder prediction 483 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02190 Eupl-Chr4 52307202 52324779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02190 371 477 B3 DNA Binding Superfamily AT3G24650 57.944 9.12e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl04g02190 B3 5.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02190 K09287 - nnu:104613375 550.821