Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02169 ATGTCGTCAGCTGGATTTCCAGGCGGCGCTACCCCCGCCTCTCAGCTCTATTTCTGCTACGAGTGCAACCGTACGGTCTCTGTAACACCGACTCCTTCGTCGGAACTTATCTGCCCTAATTGCAACGGTGGCTTCCTCGAAGAATACGAAACCCCTAACCCTAGCCCTAGCCCTAACCCTAATCCTTTCTTTGCTTTCCCTGATAATCCCTCCGGTGTTACTGGATTCCCCCTTCTCTTCTCATCCAGCGCCCTTGATCTCCAAAACCCTACCGAACTGTCTGGTCTTTTTGGTCCTGAAATCCGGCACCGATCATCGTCGGCAGTCCTTCAAGATCCTGATGTCTTCAATCCTGTTCTTTTCCTTCATAATTACCTCCAAACCCTAAGGTCTGGCGGTGCCAACATCCAATTTGTGATCGAGAACAACCCGTTGGACGCTAGCGCTGGCGCTGGCGCTGGTGGATTCCGTCTCCCGGCGAATCTCGGTGACTACTTCATCGGTCCTGGACTCGAGCAATTGATCCAGCAACTTGCAGAGAACGATCCCAACCGGTACGGCACTCCGCCGGCATCGAAATCTTCAGTTGAAAGTCTCCCGACCGTAAAGATTTCCAATGAATTGCTGGTGTCTGATTATGCACAATGCGCGGTTTGTAAAGACATGTTTGAGCTGGGAACGGAGGCGAAACAGATGCCGTGTAAACACATTTATCACTCGGACTGCATCCTCCCTTGGCTGGAGCTGCACAATTCTTGCCCAGTGTGCCGGTATGAGTTGCCTACGGATGATACTGATTATGAGCAACGAGCTCGGGGAACCACTGTCCCTGCGAATCAGATGGGAGTGGCTACGGCTGCGGCTTCGTTGGATTCTGGGAGTAGTGGTGGGACAGCTCAGGAGAATTCCCTGACACCACGATCAGCAGAACGGAGGTTTAGGATCTCGTTTCCATGGCCGTTTAGGGCATTTGGCTCACCGGCAGAGACAAGCAATAGCACCAACAATAGCAATAACGATGGGGAATCGAACTCTGGTAGTCAGGGGAATCGGGACTTTGGATCTGAAACCAGGCAAGAAGATTTGGATTAA 1092 0.5192 MSSAGFPGGATPASQLYFCYECNRTVSVTPTPSSELICPNCNGGFLEEYETPNPSPSPNPNPFFAFPDNPSGVTGFPLLFSSSALDLQNPTELSGLFGPEIRHRSSSAVLQDPDVFNPVLFLHNYLQTLRSGGANIQFVIENNPLDASAGAGAGGFRLPANLGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSSVESLPTVKISNELLVSDYAQCAVCKDMFELGTEAKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDTDYEQRARGTTVPANQMGVATAAASLDSGSSGGTAQENSLTPRSAERRFRISFPWPFRAFGSPAETSNSTNNSNNDGESNSGSQGNRDFGSETRQEDLD* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02169 363 Pfam Zinc finger, C3HC4 type (RING finger) 215 256 - -
Eupl04g02169 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 263 IPR013083 -
Eupl04g02169 363 MobiDBLite consensus disorder prediction 324 363 - -
Eupl04g02169 363 SMART ring_2 216 256 IPR001841 -
Eupl04g02169 363 FunFam E3 ubiquitin-protein ligase RING1-like 177 263 - -
Eupl04g02169 363 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Eupl04g02169 363 MobiDBLite consensus disorder prediction 326 353 - -
Eupl04g02169 363 Pfam zinc-ribbon 15 49 IPR039525 GO:0061630
Eupl04g02169 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 261 - -
Eupl04g02169 363 MobiDBLite consensus disorder prediction 286 306 - -
Eupl04g02169 363 CDD RING-H2_RNF126-like 215 257 - -
Eupl04g02169 363 SUPERFAMILY RING/U-box 196 263 - -
Eupl04g02169 363 MobiDBLite consensus disorder prediction 286 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02169 Eupl-Chr4 51997958 52011971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02169 160 272 C3H Transcription Factor Family AT5G01980 53.097 7.92e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02169 K11982 - ming:122081080 455.292