Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02166 ATGACAACTGTTGATCATTTCATGGAGTCGGTACTACCAATTGGGTATAGATTTGCACCGACAGATGAAGAACTGGTGGTGCACTATCTCTCAAACAAGGTCTCGTCTAAGCCTCTTCCTGCTCATGTCATTCGAGACATTGATGCCAAAGAACTTTACAGTAAATCTCCTCTCGAATTAGAGACGAGCTTGTGTGAAGGCGCAGACTTCTTTTTCTTTACGATCCATGAAAACAAAAATTTCCATGATGGGTGTGCTTCAACTCGGATTGTCGAAAATGGGAAAGGTTTCTGGAAATCCAAAGGAGAGGAAATATTGATCTACAAGTGGGATGGAGATGTATTCGCCGTAAAGATCTCTTTCGCTTATTGCTTTGGAGCGCCACCAAAAGGAGAGGAAACACAGTGGGTGATGGAAGAGTATCGATTACGAAATGAACATAATATCAAGAAGATTGGGATGAAGGAGGAATGTGTATTGGGAAGAATTAAATGTGCGGAAGATGATGAGGACTACATTTAG 522 0.4157 MTTVDHFMESVLPIGYRFAPTDEELVVHYLSNKVSSKPLPAHVIRDIDAKELYSKSPLELETSLCEGADFFFFTIHENKNFHDGCASTRIVENGKGFWKSKGEEILIYKWDGDVFAVKISFAYCFGAPPKGEETQWVMEEYRLRNEHNIKKIGMKEECVLGRIKCAEDDEDYI* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02166 173 Gene3D NAC domain 21 170 IPR036093 GO:0003677|GO:0006355
Eupl04g02166 173 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Eupl04g02166 173 Pfam No apical meristem (NAM) protein 13 143 IPR003441 GO:0003677|GO:0006355
Eupl04g02166 173 SUPERFAMILY NAC domain 6 164 IPR036093 GO:0003677|GO:0006355
Eupl04g02166 173 PANTHER NAC TRANSCRIPTION FACTOR 56 12 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02166 Eupl-Chr4 51951075 51953397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02166 9 153 NAC Transcription Factor Family AT3G04070 36.242 5.01e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl04g02166 NAM 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02166 - - tss:122672042 144.821