Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02143 ATGCCCCTTGAGAGAGAAAGAGAGAAAGAGAGAGAGAGATCCGATAAAACGACTGTGGTGGTAGCGATGGCGGTTTTCCGAAACTGGTTTTACTGTTTTCTGGTTTTCGGATTGGCAGTTTCGTCACTTGTCGTCGGAGATCGAAATGAGGGAGAGAAGTCCGGTAAAGATTTCGGGCAAGAATCTGACAGAGTGACGAATTTGCCGGGACAACCGGCAGTAACATTCCAGCACTACGCCGGATATGTCAAAATCCGGCAAGTAGACGAGAAGGCGTTGTTCTACTGGTTCTTCGAAGCTGAAAATGGAGTTTCAGAAAAACCTTTACTCCTTTGGCTCAATGGAGGACCGGGTTGCTCGTCGATTGCATACGGTGCCGCTCTGGAATTAGGCCCGTTTCTAATCCGAAACAATCGGTCCGAGCTTATACTCAACAAATTCTCTTGGAACAAGGTTGCAAATCTTCTATTTATCGAGGCTCCGGTCGGTGTGGGCTTCTCGTACACGAACAAGTCGGAGGATTTGCAAAGATTAGGGGATCGAATTACAGCTGAGGATTCTCATGCCTTCTTAATTGAATGGTTTAAGAGGTTCCCAAACTTGAAATCCAATGATTTCTACATTGCTGGAGAAAGCTATGCTGGTCATTACGTCCCTCAGCTTGCCGAACTCATTTACGAAAGAAACAAGGGAGCTAGCAAAGATTCTTTTATTAATTTCAAGGGTTTCATGATTGGGAACGCTGTAATCAATGATGCGACGGACCAAACCGGCTTCATTGAGTACGCTTGGAGCCATGCGATTATTTCCGATCAGCTGTACCACAACATACTCAAGGAATGTGATTTTAAGCATGATAACCAAACAACCCTCTGCACTGCATCGATCAGGAACTTCCTCCTAGCATATTCCGACATCGATATCTACAGTATCTACACACCAGTTTGTCTTAGCTCCACGTCTCTTCGAACTTCTCAGAAATTAGTCGCCGCCCCTCGATCCTTCACTCAACATGACCTGTGGCATAGGCTACCATCGGGTTACGATCCATGTGCAGACGATTATGTGGAGAAATATTTCAACAGGGAGGATGTTCAGAGGGCCCTACACGCCAATGTCACCAAAATGGCCTATCCATACACCCCATGCAGCGACGTTATCAGGGGATGGAATGATTCTCCCGACACCGTACTTCCTATCATCAAAAAGCTTTTAAACGTGGGGTTGCGTGTCTGGGTCTACAGTGGGGACACGGACGGGAGAGTGCCGGTGACGTCGACAAGGTACAGCTTAGACGAAATGGGGTTAAGGGTAAAGGAAGGGTGGAGGGCGTGGTTCCACCGGCGTCAAGTAGCAGGATGGGTGATAACGTATGAGGGTGGGCTCACGTTAGCAACGGTGAGGGGAGCTGGTCATCAGGTCCCGATCTTCGCGCCTGACCAGTCCCTTTCCCTCCTCTCTCATTTCCTCTCTGCCAAAACCTTGCCAGGTTCTCGTTTCTAA 1503 0.481 MPLEREREKERERSDKTTVVVAMAVFRNWFYCFLVFGLAVSSLVVGDRNEGEKSGKDFGQESDRVTNLPGQPAVTFQHYAGYVKIRQVDEKALFYWFFEAENGVSEKPLLLWLNGGPGCSSIAYGAALELGPFLIRNNRSELILNKFSWNKVANLLFIEAPVGVGFSYTNKSEDLQRLGDRITAEDSHAFLIEWFKRFPNLKSNDFYIAGESYAGHYVPQLAELIYERNKGASKDSFINFKGFMIGNAVINDATDQTGFIEYAWSHAIISDQLYHNILKECDFKHDNQTTLCTASIRNFLLAYSDIDIYSIYTPVCLSSTSLRTSQKLVAAPRSFTQHDLWHRLPSGYDPCADDYVEKYFNREDVQRALHANVTKMAYPYTPCSDVIRGWNDSPDTVLPIIKKLLNVGLRVWVYSGDTDGRVPVTSTRYSLDEMGLRVKEGWRAWFHRRQVAGWVITYEGGLTLATVRGAGHQVPIFAPDQSLSLLSHFLSAKTLPGSRF* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02143 500 Gene3D alpha/beta hydrolase 59 318 IPR029058 -
Eupl04g02143 500 Gene3D - 397 491 - -
Eupl04g02143 500 ProSitePatterns Serine carboxypeptidases, histidine active site. 462 479 IPR033124 GO:0004185
Eupl04g02143 500 ProSitePatterns Serine carboxypeptidases, serine active site. 208 215 IPR018202 GO:0004185
Eupl04g02143 500 Gene3D - 351 388 - -
Eupl04g02143 500 FunFam Carboxypeptidase 397 492 - -
Eupl04g02143 500 Pfam Serine carboxypeptidase 70 491 IPR001563 GO:0004185|GO:0006508
Eupl04g02143 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 168 IPR001563 GO:0004185|GO:0006508
Eupl04g02143 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 194 219 IPR001563 GO:0004185|GO:0006508
Eupl04g02143 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Eupl04g02143 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 145 157 IPR001563 GO:0004185|GO:0006508
Eupl04g02143 500 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 63 478 IPR001563 GO:0004185|GO:0006508
Eupl04g02143 500 FunFam Carboxypeptidase 59 318 - -
Eupl04g02143 500 SUPERFAMILY alpha/beta-Hydrolases 61 496 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02143 Eupl-Chr4 51524089 51533242 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02143 356 495 Calmodulin-binding Proteins AT2G22960 27.660 1.85e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02143 K16297 - nnu:104610108 770.385