Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02130 ATGGGCAAGTCCAGTAAGAAATCCGCCACCAAGGAGGTTGCTGTTGCTGCTCCCGTTGTTGTTCCTTCCTCAAAATCTGCAAAGAAAGCAGGTAATAAGAGGAACGCTGCTGAAGTACTCGATAAACAAGCAAGTGCGAAGAAACAAAAGATAGATGAAAAGATAGCCTTGATGAAGAAGAAACAGGAAACCAGTAGTTCAGAGGACCTAACCGAATCATCTTCTGATGAGGAGCCTGTTGTTCCTTCCAAAAAACAAACAGTCGCTGTTTCTAAGAATGGTTCTGCCAAAGCTGCCCCGATTAAGAAAGGAAAGCCAGCCAGCAGTTCCGATTCTTCTAGTGATGAAGAAACTAAAACGAAGGTGACCATTCCCTCCAAAAAGTTGGTGACCCCTGTGGCTAGGAATGGTTCTGTGGCAGTTTCCAAGAAGAAAGATGAATCAAGTGACAGTTCAGATTCAGATGACAGCAGCTCAGACGAGGAAGATGAAAAACCTGCAAAGGTCAGTTTGCAAGCCAAGAATGTCCCTGCAGTGGCGCCCAAGAAGAAACCTGAATCAAGTGATAGCTCCTCTGAGAGTGACTCTGAGGAAGATGAGGGAAAACCTGTGAAGGCCACTTTGCAAGCAAAAAATGTTCCTGCAGTGACCCTCAAGAAGAAAACTGAATCGAGTGATAGCTCCAGTGAGAGTGACTCCGAGGAAGATGAGAAAAACACTACCAAGGTTACGACCCAAGCAAAGAAATTGCCAGTGCCTGCCCCAAAGAATGTACCTGCACCGGCCTCTAAAAAGAAAGCGGAATCAAGTGACAGCTCTGAAAGTGAATCTGAGGAAGATGAGGTCCCAATTTCTGTAAATGCTGGGAAGCCTAATGCAAAGGCTGTCAAAAAGGAAAGCAGCAGTGATGAGGACGACAGCTCTGAGGAAAGTTCTGATGATGAGCCTTCAAAGGCACAGTTGGTAAAGAAGCCTACCAAAGTTTCCAAGGAAAGTAGTGATTCTGAGGAGTCATCTGATGAGGAAAGTGAGGAGGAACAACCCACGAAGACTCCGAAGAAAAATGCCAAACAGGACAGTGATGAAGAAATGGTAGATGCTGCATCAACGAAGGAAAATAATAGGCAAGCTGGTGCAAAATCTGAGAAAGAGCCCAAAACCCCCGCTTCCTCTCAAGTCCAAAGCACAGGATCTAAAACACTGTTTGTTGGCAACCTATCCTTCTCTGTTGAACAAGCTGATGTGGTGGAATTCTTTAAAGATGCTGGTGAAGTTGTGGATGTACGTTTTGCATCAAACGAAGAGGGACGTTTCAGAGGATTTGGCCATGTTGAGTTCGAAACACCAGCGGCAGCACAGAAGGCTTTAAAAATGAATGGTCAAGATTTATTGGGTCGAGCCGTGAAACTTGACTTGGCCCGTGAGAGGGGCGCATATACCCCACAGAGCGGTAGAGAGAGCAACTCTCATACCAGACGGGAGGGAAAGGCCAGAGTCAGACCATATTTGTACGAGGTTTTGATACGTCCCTGGGAATGGATGAGATTGAGAGCACACTGGGAGAGCATTTTGGGACTTGCGGAGAGATTTCAAGGATGTCTATCCCAAAGGATTACGATACTGGTGCTGCTAAGGGGATTGCTTACCTCGATTTCAATGATAGTGAAAGTTTCTCCAAGGCTCTAG 1686 0.4597 MGKSSKKSATKEVAVAAPVVVPSSKSAKKAGNKRNAAEVLDKQASAKKQKIDEKIALMKKKQETSSSEDLTESSSDEEPVVPSKKQTVAVSKNGSAKAAPIKKGKPASSSDSSSDEETKTKVTIPSKKLVTPVARNGSVAVSKKKDESSDSSDSDDSSSDEEDEKPAKVSLQAKNVPAVAPKKKPESSDSSSESDSEEDEGKPVKATLQAKNVPAVTLKKKTESSDSSSESDSEEDEKNTTKVTTQAKKLPVPAPKNVPAPASKKKAESSDSSESESEEDEVPISVNAGKPNAKAVKKESSSDEDDSSEESSDDEPSKAQLVKKPTKVSKESSDSEESSDEESEEEQPTKTPKKNAKQDSDEEMVDAASTKENNRQAGAKSEKEPKTPASSQVQSTGSKTLFVGNLSFSVEQADVVEFFKDAGEVVDVRFASNEEGRFRGFGHVEFETPAAAQKALKMNGQDLLGRAVKLDLARERGAYTPQSGRESNSHTRREGKARVRPYLYEVLIRPWEWMRLRAHWESILGLAERFQGCLSQRITILVLLRGLLTSISMIVKVSPRL* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02130 561 SUPERFAMILY RNA-binding domain, RBD 391 496 IPR035979 GO:0003676
Eupl04g02130 561 MobiDBLite consensus disorder prediction 186 205 - -
Eupl04g02130 561 Gene3D - 322 484 IPR012677 -
Eupl04g02130 561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 399 475 IPR000504 GO:0003723
Eupl04g02130 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 401 468 IPR000504 GO:0003723
Eupl04g02130 561 MobiDBLite consensus disorder prediction 109 123 - -
Eupl04g02130 561 FunFam Nucleolin 2 373 483 - -
Eupl04g02130 561 MobiDBLite consensus disorder prediction 1 396 - -
Eupl04g02130 561 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 172 494 - -
Eupl04g02130 561 MobiDBLite consensus disorder prediction 345 369 - -
Eupl04g02130 561 MobiDBLite consensus disorder prediction 223 243 - -
Eupl04g02130 561 MobiDBLite consensus disorder prediction 76 93 - -
Eupl04g02130 561 MobiDBLite consensus disorder prediction 313 334 - -
Eupl04g02130 561 SMART rrm1_1 400 471 IPR000504 GO:0003723
Eupl04g02130 561 MobiDBLite consensus disorder prediction 31 67 - -
Eupl04g02130 561 CDD RRM1_NUCLs 400 476 IPR034349 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02130 397 470 Eukaryotic Initiation Factors Gene Family AT1G49760 36.842 8.32e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02130 K11294 - vvi:100262769 307.76