Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02121 ATGCTGGGTGCATTGCCAATTTTGCCCCTCCCAGCGCCTCCCTCTGATGGAAATCTCGGCCCTCTCCCGCCCTCCCAAGTCACTGAGAACTCCTCGCCAAATGAGAGATCAGCGGCCGAGGAGCAGAACAACGTGAGCTTGGCTCTCGTCTCTGTTGCTACCCACACAAGAACTATTGGTATCATACACCCCCCTCCCGACATCCGAACCATCGTCGATAAAACTGCACAGTTTGTTGCCAAGAATGGTCCTGAATTTGAGAAAAGAATTATCGCTAATAATGCGGGGAATGCAAAGTTCAATTTCTTGAATGGCTCCGACCCGTATCATGCCTACTACCAGCACCGTCTCTCTGAGTTCCGTACTCAGATTCAGCAACCCACTCCGTCGCAGCCCTCTGATTCCTCTGTGCCTGAGTCTGGCCCTGATGCTGCCCCAGCTTCTGATGGCAGTGAATCTGCAGCAGCTAAGCCTGACCCGTCGGCACAGTTTAAACCTGTTCGTAAAGTCCTTGAGCCCCCGGAGGCTGAGCAGTATACTGTTCGGCTTCCTGAAGGGATTACTGGTGAGGAATTGGATATCATTAAGCTTACCGCCCAGTTTGTGGCTCGGAATGGGAAATCGTTCTTGACGGGATTGACAAGTAGAGAGATTAATAACCCTCAGTTCCATTTCCTAAAGCCGACCCACAGTATGTTCATGTTCTTTACTGCACTTGCGGATGCATACTCGAAAGTGTTGATGCCTCCGAAAGGGCTAACAGAGAAGCTGAGAAAGAGTGTGGCCGATATGACTATTGTTCTTGAACGATGCTTGCACCGGCTTGAGTGGGAAAGATCACAGGAGCAGGCAAGGCAGAAAGCTGAAGATGAGATTGAACAGGAACGGCTGCAGATGGCGATGATTGACTGGCATGATTTCGTCGTGGTGGAGATGATCGAGTTTGCAGATGATGAGGACGAGGATCTGCCCCCTCCCATGACCTTGGAGGAGGTTATTAGGAGGAGCAAGATGTCGGCTATGGAAGAAGAAGAAGAGGTTGTTGAGCCTGGAAAGGAGGCAGATATGGAAATGGATGAAGAAGAGGTACAGCTTGTTGAAGAGGGCATGAGAGCTGCCAGTCTTGAAGAGAATGATGATGAGAAGAAGAGTGAGACCAAGGCAACAGCTCCTGAGGAGCCGGAACCACCGATGAGAATTGTGAAGAACTGGAAGAGACCGGAAGATAGGATCCCTGCAGAAAGAGACCCAACAAAATTTGTTGTTTCCCCAATCACCGGGGAGCTGATTCCCATAAATGAGATGGCAGAGCACATGAGGATTTCCCTCATTGATCCCAAGTACAAGGAGCAAAAGGAGAGAATGATGGCTAAGATTCGGGAGACAACTCTCGCTCAGGACGATGAGATCTCGAGGAATATTGTGGGGCTCGCACGAACCCGGCCTGACATCTTTGGAACTACAGAGGAAGAAGTTTCCAATGCCGTGAAGGCAGAGATCGAGAAGAAGAAAGAGGAGCAACCAAAGCAAGTCATATGGGACGGCCACACGGGAAGCATTGGGAGAACTGCAAATCAGGCCATGTCTCAGAATCTTTCTGGGGAGGATCAAATTGATGCTGCTAATAATGAGGCAAGGGGCCTACCTGGGCCTGCTGCCCCTCCTCCAAAACCTGGTGTGCCATCGGTTCGCCCTCTCCCTCCTCCACCTGGGCTAGCCCTGAATATTCCTCGTATGCCCCCAAACACATTGCAATATTCTGCTCCAACTAGTAGTGGACTACTCGTGCCTCCACCAAGGCCACAAATGATGCCAATGATGCAATCAATTAGACCGCCTCCTCCTCCTATGCCAATGAACTCCGCACAACAACCATTAATGGTGAATCGACCGCCACCACTTCCTCTATCGGTTTCTATGAACCCGCCCAGTATACCCGTGCCGCCTCCACCTGGGTCGCAGTTCACGCCTCTGGCAGTTCCCCGACCTTATGCCCCTCTCCCACCACCTGCAATGTCTATGATTCCACCACCTCCCTTGCCTCTAGGAATGCCTCCACCACCACCTCCTGAGGAAGCTCCTCCTCCACTACCAGATGAACCGGAGCCGAAGAGGCAGAGGGTCGACGATTCTCTGCTTATACCAGAGGACCAGTTCTTGGCTCAACATCCGGGACCCGTCCGTATTACTGTATCTGTTCCTAATGTTGATGAAGGAAACCTGAAAGGTCAACTTCTGGAGCTAACAATACAGTCTTTATCTGAGACTATTGGCAGTCTGAAAGAGAAGATTGCAGGGGAGGTTCAGCTTCCTGCAAACAAGCAGAAACTGAGTGGACGGGCTGGGTTTCTAAAGGATAATCTATCACTTGCATATTACAACATTGGAGCAGGAGAAACACTCACTCTTGCTTTAAGGGAACGTGGTGGCAGAAAGAGATGA 2442 0.5074 MLGALPILPLPAPPSDGNLGPLPPSQVTENSSPNERSAAEEQNNVSLALVSVATHTRTIGIIHPPPDIRTIVDKTAQFVAKNGPEFEKRIIANNAGNAKFNFLNGSDPYHAYYQHRLSEFRTQIQQPTPSQPSDSSVPESGPDAAPASDGSESAAAKPDPSAQFKPVRKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFLKPTHSMFMFFTALADAYSKVLMPPKGLTEKLRKSVADMTIVLERCLHRLEWERSQEQARQKAEDEIEQERLQMAMIDWHDFVVVEMIEFADDEDEDLPPPMTLEEVIRRSKMSAMEEEEEVVEPGKEADMEMDEEEVQLVEEGMRAASLEENDDEKKSETKATAPEEPEPPMRIVKNWKRPEDRIPAERDPTKFVVSPITGELIPINEMAEHMRISLIDPKYKEQKERMMAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKKEEQPKQVIWDGHTGSIGRTANQAMSQNLSGEDQIDAANNEARGLPGPAAPPPKPGVPSVRPLPPPPGLALNIPRMPPNTLQYSAPTSSGLLVPPPRPQMMPMMQSIRPPPPPMPMNSAQQPLMVNRPPPLPLSVSMNPPSIPVPPPPGSQFTPLAVPRPYAPLPPPAMSMIPPPPLPLGMPPPPPPEEAPPPLPDEPEPKRQRVDDSLLIPEDQFLAQHPGPVRITVSVPNVDEGNLKGQLLELTIQSLSETIGSLKEKIAGEVQLPANKQKLSGRAGFLKDNLSLAYYNIGAGETLTLALRERGGRKR* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02121 813 FunFam Probable splicing factor 3A subunit 1 702 812 - -
Eupl04g02121 813 SUPERFAMILY Ubiquitin-like 709 811 IPR029071 -
Eupl04g02121 813 MobiDBLite consensus disorder prediction 123 138 - -
Eupl04g02121 813 MobiDBLite consensus disorder prediction 542 561 - -
Eupl04g02121 813 FunFam Splicing factor 3a, subunit 1 187 245 - -
Eupl04g02121 813 MobiDBLite consensus disorder prediction 587 641 - -
Eupl04g02121 813 MobiDBLite consensus disorder prediction 675 696 - -
Eupl04g02121 813 MobiDBLite consensus disorder prediction 21 41 - -
Eupl04g02121 813 Pfam Ubiquitin family 741 808 IPR000626 GO:0005515
Eupl04g02121 813 SUPERFAMILY Surp module (SWAP domain) 55 125 IPR035967 GO:0003723|GO:0006396
Eupl04g02121 813 MobiDBLite consensus disorder prediction 594 621 - -
Eupl04g02121 813 FunFam Splicing factor 3A subunit 1 55 126 - -
Eupl04g02121 813 CDD Ubl_SF3a120 726 806 IPR035563 -
Eupl04g02121 813 Gene3D Surp module 187 245 IPR035967 GO:0003723|GO:0006396
Eupl04g02121 813 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 51 762 IPR045146 GO:0003723|GO:0045292
Eupl04g02121 813 Coils Coil 278 298 - -
Eupl04g02121 813 MobiDBLite consensus disorder prediction 675 705 - -
Eupl04g02121 813 SUPERFAMILY Surp module (SWAP domain) 170 244 IPR035967 GO:0003723|GO:0006396
Eupl04g02121 813 MobiDBLite consensus disorder prediction 337 357 - -
Eupl04g02121 813 Pfam Surp module 69 120 IPR000061 GO:0003723|GO:0006396
Eupl04g02121 813 Pfam Surp module 192 243 IPR000061 GO:0003723|GO:0006396
Eupl04g02121 813 ProSiteProfiles Ubiquitin domain profile. 754 810 IPR000626 GO:0005515
Eupl04g02121 813 Coils Coil 358 378 - -
Eupl04g02121 813 MobiDBLite consensus disorder prediction 1 41 - -
Eupl04g02121 813 MobiDBLite consensus disorder prediction 123 170 - -
Eupl04g02121 813 Gene3D Surp module 55 126 IPR035967 GO:0003723|GO:0006396
Eupl04g02121 813 ProSiteProfiles SURP motif repeat profile. 194 236 IPR000061 GO:0003723|GO:0006396
Eupl04g02121 813 SMART ubq_7 734 806 IPR000626 GO:0005515
Eupl04g02121 813 Gene3D - 702 812 - -
Eupl04g02121 813 ProSiteProfiles SURP motif repeat profile. 71 113 IPR000061 GO:0003723|GO:0006396
Eupl04g02121 813 Pfam Pre-mRNA splicing factor PRP21 like protein 262 479 IPR022030 -
Eupl04g02121 813 MobiDBLite consensus disorder prediction 372 397 - -
Eupl04g02121 813 SMART surpneu2 69 122 IPR000061 GO:0003723|GO:0006396
Eupl04g02121 813 SMART surpneu2 192 245 IPR000061 GO:0003723|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02121 741 810 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 40.000 2.52e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02121 K12825 - ming:122064795 1171.38