Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02108 ATGTCAGCCACCTCCACAAGTGGCAGCGCTGCCACTAGCGCCACCACAGAAGATGTATTCCGGCCATCTCCGGCCATGAACTCCATCGACTTGACCGAACCTTCAGGCTCCGGCGTGACCCAGTCCTTACCTTTCTCTTCTGGAAACCCTAGAATCGAAGAAATCAGGGGAATTATGCATCTCTACCAGAACGACATCTCCGCCTCAACCTCTGATCTCCCGGTGGGGAGGAAACCGCTTGTTTGTGTGCTCGCAGTACCGAATCACATGACTTACGCAGATTTTTGCCAGTTTTGTGGCTCATTTATTCAACATATGTTGGAGATGCGAATAGTCAGGAATGATGGAATGAAGGATAGGTATAGTATCTTGATAAGATTTGATAATCAGAATTCCACAGATAATTTCTACCAGCATTTTAACGGAAGGTGCTTCTCGTCTCTGGAGGCAGCGACTTGCCGCGTCCTTTTTACAGTAGATGTACAGTACACGGGATCAATAGAACATGTACTGACTTCTCCTGCAAGCTCAACGGAACAGTCCACATGTCCAGTCTGCCTTGAGAGATTAGACCAAGACATGGGCGGAATCCTCATTACTATCTGCAATCATTCTTTCCATTGCTCTTGTATTTCACACTGGACAGATTCTTCTTGTCCGGTCTGCAGATATTGCCAGCAACAGCCTGAAAAATCAACATGCTCTGTTTGTGAAACTTCTGAGAATCTCTGGATTTGTGTTATCTGTGGTTTTGTCGGGTGTGGGAGGTATAAAGAAGGTCATGCTATTATACATTGGAAAGAAACACAACACTGCTATTCTCTTGAATTGGAAACCCAGCGTGTTTGGGATTACGTTGGAGACAATTATGTTCACCGGCTGATCCAATCCAAAACTGACGGGAAGTTGGTTGAGTTTAATTTCTGTGTGCATGCTGATGACGGTTGTGGAAGTTGTGAATGCAGTGTAGATTCTGGAATTAGTGAGGCTCTCTTCAACAGTAAAGTTGAAACTACCGTTAATGAGTACAATGACCTTCTTACATCACAACTTGAGAACCAAAGAATTTATTTTGAGTCTCTACTGCTAGAGGTCAAGGAGGAAACTGAAAAAGAAATTTCTGAATCTGTTGAGAAGGTCGTGAGTTTTAAACTGCATAAGATGCAAGCCAAGCTGGATAAATTTGTTGAAGAGAAGAAATTTCTCGATGATATCAATGATAATCTCGTGAAAAACCAGGAGATGTGGAAGGCAAAGATTCTGGAACTTCAAGAAAGGGAGAGAACGGCTTTGAGATTGAAGGATGAGAAAATACAGGACCTTGAAGAACAGCTAAGAGAGTTGATGGTGTACATCGAAGGAGAAAATACCATGGAGCAGCTACCAACATCAAGTGAGATCAAGGATGGAATGGTTTTGCCAATACCAATACATAGAGCCCTCCTCCTCGATAAATAA 1458 0.4328 MSATSTSGSAATSATTEDVFRPSPAMNSIDLTEPSGSGVTQSLPFSSGNPRIEEIRGIMHLYQNDISASTSDLPVGRKPLVCVLAVPNHMTYADFCQFCGSFIQHMLEMRIVRNDGMKDRYSILIRFDNQNSTDNFYQHFNGRCFSSLEAATCRVLFTVDVQYTGSIEHVLTSPASSTEQSTCPVCLERLDQDMGGILITICNHSFHCSCISHWTDSSCPVCRYCQQQPEKSTCSVCETSENLWICVICGFVGCGRYKEGHAIIHWKETQHCYSLELETQRVWDYVGDNYVHRLIQSKTDGKLVEFNFCVHADDGCGSCECSVDSGISEALFNSKVETTVNEYNDLLTSQLENQRIYFESLLLEVKEETEKEISESVEKVVSFKLHKMQAKLDKFVEEKKFLDDINDNLVKNQEMWKAKILELQERERTALRLKDEKIQDLEEQLRELMVYIEGENTMEQLPTSSEIKDGMVLPIPIHRALLLDK* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02108 485 PANTHER BRCA1-ASSOCIATED PROTEIN 21 476 - -
Eupl04g02108 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 303 IPR013083 -
Eupl04g02108 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 224 IPR013083 -
Eupl04g02108 485 SUPERFAMILY RING/U-box 199 298 - -
Eupl04g02108 485 Pfam BRCA1-associated protein 2 74 169 IPR011422 -
Eupl04g02108 485 ProSiteProfiles Zinc finger RING-type profile. 183 223 IPR001841 -
Eupl04g02108 485 MobiDBLite consensus disorder prediction 1 46 - -
Eupl04g02108 485 SUPERFAMILY RING/U-box 168 228 - -
Eupl04g02108 485 SMART Zf_UBP_1 233 282 IPR001607 GO:0008270
Eupl04g02108 485 CDD RING-H2_BRAP2 182 224 IPR047243 -
Eupl04g02108 485 Coils Coil 406 451 - -
Eupl04g02108 485 CDD RRM_BRAP2_like 81 162 - -
Eupl04g02108 485 Pfam Zn-finger in ubiquitin-hydrolases and other protein 234 293 IPR001607 GO:0008270
Eupl04g02108 485 Pfam Ring finger domain 182 223 IPR001841 -
Eupl04g02108 485 ProSiteProfiles Zinc finger UBP-type profile. 217 310 IPR001607 GO:0008270
Eupl04g02108 485 SMART ring_2 183 222 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02108 Eupl-Chr4 50613189 50621027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02108 179 223 C3H Transcription Factor Family AT1G72220 46.809 2.09e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02108 K10632 - msin:131254707 758.829