Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02093 ATGGCGGGCTTTATCAAGCTAGATGATTCTCCGATGTTCCAAAAGCAGATACATTCTCTTGAACAGACAACAGATGAATTAAAAGATCGCTGCCAAATTCTTTACAAAGGATGTAATAAATTTATGGCCTCCCTTGGAGAAGCATGTGATGGAGACACGGCCTTTGCCGATTCTTTGGAAGCATTTGGGGGTGGACACGATGATCCTGTCAGCGTATCCATAGGGGGGCCTGTTATATCCAAGTTCATTACGGCATTTTGTGAGCTTGGTACTTATAAGGAACTTCTTCGATCCCAAGTAGAACATATGTTAAGCGACCGTTTGATGCAATTCATGGCTGTCGATCTACATGATGCAAAGGAGTCTCGTCGACGTTTTGACAAAGCTATGCATGTTTATGATCAGGCGCGTGAAAGGTTCATGTCATTAAAGAAGGGCACACGAGCGGATATTGTTGCTGAACTAGAAGAGGATCTACAAAACTCAAAGTCAGCATTTGAGAGATGCCGCTTCAATCTAGTAAATGCCCTCACAAATATTGAAGCAAAGAAAAAGTACGAGTTTCTGGAATCTTTTAGTGCCATTATGGATGCTCATCTGAGATATTTTAAGCTGGGATATGAGTTGTTGAGTCAGATGGAACCATTCATTCACGAGGTCTTGTCATATGCTCAACAATCAAAAGAAATGGCCAATGTTGAACAAGACAAACTCGCAAAGAGGATTCAGGAGTTCAGAACCCAGGTTGAACTAGACAATTTACGTGCTTCCAGTAACGTGGAGGCCTCAACAAGTGCTGTTGGTATTCATGTTGTTGGCATTAGTTCTTACAAAAACATAGAAGCACTGATGCAGTCTACTGCTAATGGGGAGGTCCAGATAATCAAACAAGGCTATCTCCTGAAACGGTCTTCAAGTTTTAGAGGAGATTGGAAGAGGAGGTTCTTTGTCCTTGACAGTCATGGGACTTTATACTATTATAGAAATAAGGGGACAAAACCTGTGGGCTCTCAATCACATCAGTCAACTGGTACATCTGAGCATGGTAGTGGCATGTTTGGTAGGTTCAGAACGAGGCACCATAGGGCATCATCTATGAGTGAAGAAAAGCTTGGTTGCCGTACTGTTGATCTTCGTACATCGGCAATAAAGATTGATGCAGAACATATAGATCTGCGACTTTGCTTCAGAATTATTTCTCCATCAAAAACTTACACATTACAGGCTGAAAATGAAGCAGATAGAATGGATTGGGTTGATAAAATCACAGCAGTTATTACTTCCCTTCTAAATTCTCCTTTCCTTGAGCAGCTTCCTCCTGGACGAAAGGATATGGACCTTAACAGCTCTACTGATGGTGCTGGTTGTGATTCTTCATTACTGGATGGCCATTTAAACTCAGAGGATGACCTGAAAATCAAGGGACAAGATGGTGTTAAAAGGATTCTCAGAAAAATTTCTGGAAATGATCTTTGTGCAGAATGCAGTGCTCCTGAACCTGAGTGGGCCTCTTTAAATCTTGGGGTTTTGTTGTGCATTGAATGCTCTGGGGTTCACCGGAATCTTGGAGTTCACATTTCAAAGGTGAGATCCATAACATTAGATGTCAAGGTTTGGGAGCCCACTATCTTGGATTTATTTCGTGCCCTGGGCAATGCTTACTGCAACTCTGTGTGGGAGGAATCACTTCAACTTCAGAATGAAAGAAGGGACGAGCTGGACACACTCTTCTTGTCAATTATAAAACCTGGCCCCAAAGATGCTATTTTGAAAAAGGAGAAATATATTCAGTCAAAGTATGTGGAGAAACTGCTAGTAATCAAAGAAGCAGCTGGGTCTGAAATTCCTTCTCACTCCGCCCGGATATGGGAAGCAGTTAAAAGTAATAACCTACAAGCAGTCTATCGCCTCATTGTGGTTTCAGATGTGAATATCAACACCAGCTATGATGAAGTGGATGATAGTGATCTGTATCACCTTGTTAATACACCAGATTCACAAAATAGTTGCCACACGGCAGAGAGGAAACAAAATGATCCAGCAGCCTGTCAGAGAATTAAGGATTCTGGTGAGCCAGCAAATTGTCTGCGAGGTTGTTCCTTATTGCATTTGGCATGTCATGTTGGTGATCCTGTGATGCTCGAGCTGTTGCTACAGTTCGGCGCTGACATAAATATTCGAGATTTCCATGGAAGGACTCCTCTGCACCATTGCATTTCCAAAGGGAACAATTCATTTGCGAAGTATCTACTCAGAAGGGGTGCACGCCCATCAATCAAAGATGGTGGGGGCCAAACTGCATTGGAAAGAGCAATGGAGATGGGAGCTATAACTGATGAGAAGCTTTTCATTTTGCTCGCTGAGCGTTAG 2370 0.4249 MAGFIKLDDSPMFQKQIHSLEQTTDELKDRCQILYKGCNKFMASLGEACDGDTAFADSLEAFGGGHDDPVSVSIGGPVISKFITAFCELGTYKELLRSQVEHMLSDRLMQFMAVDLHDAKESRRRFDKAMHVYDQARERFMSLKKGTRADIVAELEEDLQNSKSAFERCRFNLVNALTNIEAKKKYEFLESFSAIMDAHLRYFKLGYELLSQMEPFIHEVLSYAQQSKEMANVEQDKLAKRIQEFRTQVELDNLRASSNVEASTSAVGIHVVGISSYKNIEALMQSTANGEVQIIKQGYLLKRSSSFRGDWKRRFFVLDSHGTLYYYRNKGTKPVGSQSHQSTGTSEHGSGMFGRFRTRHHRASSMSEEKLGCRTVDLRTSAIKIDAEHIDLRLCFRIISPSKTYTLQAENEADRMDWVDKITAVITSLLNSPFLEQLPPGRKDMDLNSSTDGAGCDSSLLDGHLNSEDDLKIKGQDGVKRILRKISGNDLCAECSAPEPEWASLNLGVLLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILDLFRALGNAYCNSVWEESLQLQNERRDELDTLFLSIIKPGPKDAILKKEKYIQSKYVEKLLVIKEAAGSEIPSHSARIWEAVKSNNLQAVYRLIVVSDVNINTSYDEVDDSDLYHLVNTPDSQNSCHTAERKQNDPAACQRIKDSGEPANCLRGCSLLHLACHVGDPVMLELLLQFGADINIRDFHGRTPLHHCISKGNNSFAKYLLRRGARPSIKDGGGQTALERAMEMGAITDEKLFILLAER* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02093 789 PRINTS HIV Rev interacting protein signature 531 552 IPR001164 GO:0005096
Eupl04g02093 789 PRINTS HIV Rev interacting protein signature 489 508 IPR001164 GO:0005096
Eupl04g02093 789 PRINTS HIV Rev interacting protein signature 508 525 IPR001164 GO:0005096
Eupl04g02093 789 MobiDBLite consensus disorder prediction 333 353 - -
Eupl04g02093 789 Pfam BAR domain of APPL family 7 232 IPR004148 GO:0005515|GO:0005737
Eupl04g02093 789 ProSiteProfiles ARF GTPase-activating proteins domain profile. 477 613 IPR001164 GO:0005096
Eupl04g02093 789 Pfam Putative GTPase activating protein for Arf 481 606 IPR001164 GO:0005096
Eupl04g02093 789 ProSiteProfiles Ankyrin repeat profile. 697 729 IPR002110 GO:0005515
Eupl04g02093 789 SUPERFAMILY PH domain-like 292 439 - -
Eupl04g02093 789 SUPERFAMILY ArfGap/RecO-like zinc finger 479 606 IPR037278 -
Eupl04g02093 789 PANTHER CENTAURIN/ARF 6 787 IPR045258 GO:0005096
Eupl04g02093 789 ProSiteProfiles Ankyrin repeat region circular profile. 697 728 - -
Eupl04g02093 789 CDD ArfGap 481 600 - -
Eupl04g02093 789 MobiDBLite consensus disorder prediction 333 349 - -
Eupl04g02093 789 Gene3D - 286 435 IPR011993 -
Eupl04g02093 789 Gene3D - 608 789 IPR036770 -
Eupl04g02093 789 ProSiteProfiles Ankyrin repeat profile. 730 762 IPR002110 GO:0005515
Eupl04g02093 789 SMART arf_gap_3 477 613 IPR001164 GO:0005096
Eupl04g02093 789 Gene3D Arf GTPase activating protein 464 607 IPR038508 -
Eupl04g02093 789 SMART ANK_2a 697 726 IPR002110 GO:0005515
Eupl04g02093 789 SMART ANK_2a 730 759 IPR002110 GO:0005515
Eupl04g02093 789 SUPERFAMILY Ankyrin repeat 623 777 IPR036770 -
Eupl04g02093 789 Gene3D Arfaptin homology (AH) domain/BAR domain 6 251 IPR027267 -
Eupl04g02093 789 CDD BAR_SFC_plant 15 216 IPR035670 -
Eupl04g02093 789 ProSiteProfiles Ankyrin repeat region circular profile. 730 761 - -
Eupl04g02093 789 SMART PH_update 294 429 IPR001849 -
Eupl04g02093 789 CDD PH_ACAP 296 431 - -
Eupl04g02093 789 SUPERFAMILY BAR/IMD domain-like 7 316 IPR027267 -
Eupl04g02093 789 SMART 5bar 12 219 IPR004148 GO:0005515|GO:0005737
Eupl04g02093 789 ProSiteProfiles PH domain profile. 293 427 IPR001849 -
Eupl04g02093 789 Pfam Ankyrin repeats (3 copies) 702 777 IPR002110 GO:0005515
Eupl04g02093 789 Pfam PH domain 295 426 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02093 Eupl-Chr4 50244475 50316544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02093 474 600 C2H2 Transcription Factor Family AT4G21160 40.000 7.74e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02093 K12489 - nnu:104611806 1213.36