Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02090 ATGGCGACCTTCACTGTGTTGTTGTTATGGGCTGTCTTGTTTTCTTTTAATGCTGGGGGGGAACTAGTAGCATCTGAATCATTGAGGGAAGCGCAGGCTCTTCTCCAATGGAAAGCCAGCCTCCGCAAACCAGCTGCTCTCCATTCGTGGACGTCAAGGTCAAGCCCATGCAAGTGGTTTGGAATAGCTTGCAACAAGGAAGGAAGCGTCGCGGAAATAAACCTAGAGAAGGCAAATTTGCAAGGTAAACTCCACAACTTGAGCTTCTCCTCCTTTCCGAATCTCATTTGTCTCAACCTCACCGGCAATTCCCTTTCTGGAACAATCCCAGTCCTTATCGGCGTTCCTTCCAAACTCATGCACCTCGACCTGTCCGATAATAATCTCACCGGTCTAATCCCTCCTGCTCTAGGGAATCTGAAAAATTTGGTTAAGTTGTTGTTGAGAGAGAACAATCTCATCGGTACGATCCCTCCTAGTATATTTAACTGTAGTAATCTAAAGGTGTTGCGTTTATCCATGAATCAGTTATCTGGTTCAATACCTCAGGAACTGGGAAATTTAACATCTTTGATTGCACTTGGTTTGAGTGGTAACTTCTTTGTAGGCCAAATACCACAACAAATATGCCAAGGTGGATTACTTGAAAGATTAGCAGTAGAAGACAATTATTTCACAGGTCCTATTCTGAAAAGCTTGAGAAATTGCACAGCTTTAATGAGAGTCAGACTTGAAAGAAACCAGTTTGAAGGAAATATAACCCAAGATTTCGGAGTATATAAAAATCTCCACTATCTTGACCTGAGCTACAACAAATTTTATGGGACACTCTCATCAAGTAATTGGAGAGAATGTCGTAATTTGATGTTGCTAATCATCTCCGGGAATAAGATTAGTGGTAGAATACCATCTGAGTTGGGTCTGCTAAGTCAACTAGAAATACTTGACCTTTCTTCAAACCAACTTGTTGGAGAGATACCGGAAGAATTGGGAAGGTTATCTGCTTTATTCAAGCTAAGATTGAATAATAACCACCTTTCTGGCCATATACCACTAGAAATCGGTCAACTAGTCAATCTAGAGTCCCTAGACCTCTCAGCAAACAAGTTGACAGGACCAATCCCAACGCAAATTGGGGACTGCTTGAAATTGCGACTTTTGAGGTTGAGCAAAAACTATTTAACTGAAAACATCCCATTTCAGATTGGTAATTTAGTAGCTCTGCAACTACTGGATCTTAGTCAAAACTCACTTACTGGAGAGATATCACCACAACTTGGAAAATTGACAATGTTAGAAAACTTGAATTTCTCCCACAATCATCTCACAGGTTCCATTCCCTCTTCTCTCGGGGAGATGATCAGCTTGACATCCATTGATTTGTCATACAATGGTTTGGACGGTCCTATCCCCAATAGTAAAGCCTTTTTACATGTTCCACTGGAGGCATATAAAAAAAACAAAGGTTTATGTGGTGGAGTCAAAGGTTTGCAACCTTGCCTTCCATCTCTTGCAACCACTAGTTCAAAGAGCCACAGGAACCAAATCATGACTTCCATTGTTATACCTCTTTTGAGCATCATGTTTCTTGCATCTATAATTGTCGTAATTTTTTACTCTCGACAAAAAGAGAAAAATGTGCAAACAAAGGAAAAAACAATAGACAACATTGATCTATTTTCAGTTTGGAATTATGATGGGAGGATAACATATGAAGACATCATTGAAGCTACAGAGGATTTTGACTCCAAATATTGCATTGGAGAGGGAGGTTATGGAAGAGTTTATAAAGCAGAATTGCCTACAAGAGATATAGTAGCTGTGAAGAAGCTTTATCCCTTCGAAGATGGGGAGCTAGTTGATGAGAAAGGTTTTAGGAATGAAATATGTGTTTTAACCGAAATACGTCATCGAAACATTGTAAAATTCTATGGGTTCTGCTCACACTCTCGATGCATGTTTCTGATTTACGAGTATATGGAATTGGGAAGCTTAGCAGGTATCTTAAGCAATGGATTACAGGCTGCAAAACTAGATTGGATTAAGAGGGTGAATGTCATTAAAGGTGTTGCTCATGCTTTATCTTACATGCATCATGATTGCTCTTCACCAATAATTCATCGAGACATATCGGCCAAAAATATTTTATTGAGCTCAAAATTTGAGGCTTGTGTCAGTGATTTCGGCACTGCTAGATTGTTAAAGCCCGATTCATCAAATTGGACTACACTTGCAGGCACTCATGGATATACAGCTCCAGAGCTTGCCTACACTATGGTTGTGACTGAAAAATGCGATGTTTATAGCTTTGGAGTTGTGGTACTAGAAACAATAATGGGAAGGCATCCAGGAGATCTCATTTACTCATTATCATCGTCAGTTGCTCAAAATACAATGTTGAAGGACGTGTTAGATCCACGTCTCTTGCCCCCGGCTGACCAACAAGTTGCACAAGATTTGGTTTTTGCAGTGACGTTGGCACTTGCATGCATACATTCCAATCCACAATCACGGCCAACCATGCAATGCGTATCTCTGGAGCTACTTGCTTGCAGTCCACCTCTCCCTCAGCCCTTTCATGCTATTTCACTTTGGCAACTAATGGGTCTCAAAATATAA 2619 0.4051 MATFTVLLLWAVLFSFNAGGELVASESLREAQALLQWKASLRKPAALHSWTSRSSPCKWFGIACNKEGSVAEINLEKANLQGKLHNLSFSSFPNLICLNLTGNSLSGTIPVLIGVPSKLMHLDLSDNNLTGLIPPALGNLKNLVKLLLRENNLIGTIPPSIFNCSNLKVLRLSMNQLSGSIPQELGNLTSLIALGLSGNFFVGQIPQQICQGGLLERLAVEDNYFTGPILKSLRNCTALMRVRLERNQFEGNITQDFGVYKNLHYLDLSYNKFYGTLSSSNWRECRNLMLLIISGNKISGRIPSELGLLSQLEILDLSSNQLVGEIPEELGRLSALFKLRLNNNHLSGHIPLEIGQLVNLESLDLSANKLTGPIPTQIGDCLKLRLLRLSKNYLTENIPFQIGNLVALQLLDLSQNSLTGEISPQLGKLTMLENLNFSHNHLTGSIPSSLGEMISLTSIDLSYNGLDGPIPNSKAFLHVPLEAYKKNKGLCGGVKGLQPCLPSLATTSSKSHRNQIMTSIVIPLLSIMFLASIIVVIFYSRQKEKNVQTKEKTIDNIDLFSVWNYDGRITYEDIIEATEDFDSKYCIGEGGYGRVYKAELPTRDIVAVKKLYPFEDGELVDEKGFRNEICVLTEIRHRNIVKFYGFCSHSRCMFLIYEYMELGSLAGILSNGLQAAKLDWIKRVNVIKGVAHALSYMHHDCSSPIIHRDISAKNILLSSKFEACVSDFGTARLLKPDSSNWTTLAGTHGYTAPELAYTMVVTEKCDVYSFGVVVLETIMGRHPGDLIYSLSSSVAQNTMLKDVLDPRLLPPADQQVAQDLVFAVTLALACIHSNPQSRPTMQCVSLELLACSPPLPQPFHAISLWQLMGLKI* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02090 872 PANTHER LEUCINE RICH REPEAT KINASE 2 138 860 - -
Eupl04g02090 872 Gene3D Ribonuclease Inhibitor 27 180 IPR032675 -
Eupl04g02090 872 SMART LRR_typ_2 188 212 IPR003591 -
Eupl04g02090 872 SMART LRR_typ_2 429 453 IPR003591 -
Eupl04g02090 872 SMART LRR_typ_2 405 428 IPR003591 -
Eupl04g02090 872 SMART LRR_typ_2 357 381 IPR003591 -
Eupl04g02090 872 SMART LRR_typ_2 140 164 IPR003591 -
Eupl04g02090 872 SMART LRR_typ_2 309 333 IPR003591 -
Eupl04g02090 872 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
Eupl04g02090 872 ProSitePatterns Tyrosine protein kinases specific active-site signature. 705 717 IPR008266 GO:0004672|GO:0006468
Eupl04g02090 872 Gene3D Ribonuclease Inhibitor 279 375 IPR032675 -
Eupl04g02090 872 Gene3D Ribonuclease Inhibitor 376 500 IPR032675 -
Eupl04g02090 872 SUPERFAMILY L domain-like 64 347 - -
Eupl04g02090 872 FunFam MDIS1-interacting receptor like kinase 2 660 853 - -
Eupl04g02090 872 Pfam Protein kinase domain 585 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g02090 872 ProSitePatterns Protein kinases ATP-binding region signature. 587 610 IPR017441 GO:0005524
Eupl04g02090 872 SUPERFAMILY Protein kinase-like (PK-like) 556 845 IPR011009 -
Eupl04g02090 872 ProSiteProfiles Protein kinase domain profile. 581 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g02090 872 Gene3D Ribonuclease Inhibitor 181 278 IPR032675 -
Eupl04g02090 872 PRINTS Leucine-rich repeat signature 309 322 - -
Eupl04g02090 872 PRINTS Leucine-rich repeat signature 119 132 - -
Eupl04g02090 872 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Eupl04g02090 872 Pfam Leucine rich repeat 142 199 IPR001611 GO:0005515
Eupl04g02090 872 Pfam Leucine rich repeat 359 418 IPR001611 GO:0005515
Eupl04g02090 872 FunFam Nuclear pore complex protein NUP107 27 173 - -
Eupl04g02090 872 Gene3D Transferase(Phosphotransferase) domain 1 660 853 - -
Eupl04g02090 872 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 189 503 - -
Eupl04g02090 872 FunFam Leucine-rich repeat receptor protein kinase MSP1 542 659 - -
Eupl04g02090 872 Gene3D Phosphorylase Kinase; domain 1 540 659 - -
Eupl04g02090 872 SUPERFAMILY L domain-like 261 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02090 Eupl-Chr4 50169279 50172403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02090 69 753 Receptor kinase-like Gene Family AT4G08850 46.078 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Eupl04g02090 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02090 - - msin:131240492 924.465