Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02083 ATGGCTCCTCCTACTAAAGCTACTGCGAAGAAGCCGGATGCAAAAGCACAGGCCTTAAAGGCTGCGAAGGCAGTGAAATCAGGGGCTTCTTCCCTGAAAAAGAAGGCAAAGAAGATCCGCACTTCTGTCACTTTTCACCGACCCAAGACGCTAAAGAAAGAACGAAACCCAAAGTATCCCCGCATCAGTGCCACTCCGAGAAATAAGCTGGATCACTATCAGATCCTTAAATATCCTCTCACCACTGAATCTGCCATGAAAAAGATAGAAGACAATAACACACTTGTCTTCATTGTTGATATCCGGGCAGATAAGAAGAAGATAAAGGCAGCCGTGAAGAAGATGTATGATATCCAGACCAAAAAAGTTAATACCTTGATCAGGCCCGATGGTACGAAGAAAGCATATGTGAGGTTGATGCCAGATTACGATGCTTTGGATGTTGCAAACAAGATTGGAATCATTTAA 468 0.4359 MAPPTKATAKKPDAKAQALKAAKAVKSGASSLKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLMPDYDALDVANKIGII* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02083 155 Hamap 50S ribosomal protein L23 [rplW]. 75 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Eupl04g02083 155 Gene3D - 36 155 IPR012677 -
Eupl04g02083 155 NCBIfam 50S ribosomal protein L23 79 155 IPR019985 GO:0003735|GO:0005840|GO:0006412
Eupl04g02083 155 PANTHER 60S RIBOSOMAL PROTEIN L23A 6 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Eupl04g02083 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 72 148 IPR012678 GO:0003735|GO:0005840|GO:0006412
Eupl04g02083 155 Pfam Ribosomal protein L23 75 135 IPR013025 GO:0003735|GO:0005840|GO:0006412
Eupl04g02083 155 Pfam Ribosomal protein L23, N-terminal domain 14 64 IPR005633 -
Eupl04g02083 155 FunFam 60S ribosomal protein L23a 34 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02083 Eupl-Chr4 49950211 49957175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02083 38 155 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 93.220 9.66e-69 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02083 K02893 - msin:131225268 238.424