Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02072 ATGGCTTCTCTGCCTCTTCACCTGCCGACCCACTCCTTCATTTCCAACAACAAGTTGAAAGGTTTCAACTATCCAAGACCCAACTACTCTTTCCTCTGTAACAACATTCGAGCCACCAAAGCTTCAATCGAGACACCTCCCTTTAGATTATTCGAACCTCCCCAAACAGACGAATCATCTTCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATAGGCTACGTTCGGAGTGTTCGAGCTTATGGGGTTGAATTCAAGGAAGGGCCCAATGGGTTCGGAGTTTATGCTTCCAAAGATATCGAACCGCTACGCCGAGCCAGGCTAATCATGGAAATTCCATTAGAGTTGATGTTAACCATAAGTCAAAAGCTTCCCTGGATGTTTTTTCCAGACATTGTACCAGTGGGCCATCCAATATTTGATATTATTAACTCAACCAATCCAGAGACAGATTGGGACCTTAGATTAGCATGCCTTCTTTTGCTTGCGTTTGATCAGGAGGGTAACTTCTGGCAGTTGTATGGTGACTTTTTACCTAGTGCAGACGAGTGCACTAGCTTGCTTCTAGCTACAGAGGAGGACCTTTTGGAGCTGCAGGACCAAAATCTGGCTTGGACTATGAAAGAACAGAAACACCGAGCATTGGAGTTTTGGGAAAAGAATTGGCACTCTGCTGTTCCCCTTAAAATAAAGCGCCTTGCCCGCGATCCTGAAAGATTCATCTGGGCAGTGAGTATTGCACAATCACGATGTATTGACTTGCAAATGAGGATTGGTGCACTTGTCCAAGATGCAAACATGCTAATTCCTTATGCTGACATGCTGAACCATTCCTTTCAGCCAACTTGTTTTTTCCATTGGCGTTTTAAGGACCGCATGCTTGAGGTGATGATAAATGCTGGGCAACGAATCAGAAAAGGGGATGAGATGACGATCAATTATATGAGTGGGAAGAAGAATAACATGTTCATGCAACGATATGGCTTTTCATCACTGGCGAATCCTTGGGATGTCATCCAGTTCTCTGGCGATGCAGAAATTCACTTAGATTCCTTCTTGTCAGTATTCAATATATCTGGCCTGCCTGAGGAATACTATCATAACAGTCAGCTATCAAAAGAGGTAGATGGTTTTGTTGATGGAGCTGTCATAGCAGCAGCACGAACATTGCCCACATGGTCGGATGGGGATATGCCTTCAGTACCAAGCAGAGAAAGGAAGGCTGCGAGAGTGTTACAGGAAGAATGCCAGCAGTTGTTGGCAGAATTCCCCACAACTTCTGATCAAGATCAGCAGATCCTAGATTCTATGCCAGAAGCGAGGAGGACACTCGAGGCAGCAATCAGATATCGTTTACATCGGAAGTTGTTTCTCGAGAAGGTCATCCAGGCATTGGAGATATATCAAAGGCGGATACTGTTTTGA 1428 0.4482 MASLPLHLPTHSFISNNKLKGFNYPRPNYSFLCNNIRATKASIETPPFRLFEPPQTDESSSELEPADPDFYKIGYVRSVRAYGVEFKEGPNGFGVYASKDIEPLRRARLIMEIPLELMLTISQKLPWMFFPDIVPVGHPIFDIINSTNPETDWDLRLACLLLLAFDQEGNFWQLYGDFLPSADECTSLLLATEEDLLELQDQNLAWTMKEQKHRALEFWEKNWHSAVPLKIKRLARDPERFIWAVSIAQSRCIDLQMRIGALVQDANMLIPYADMLNHSFQPTCFFHWRFKDRMLEVMINAGQRIRKGDEMTINYMSGKKNNMFMQRYGFSSLANPWDVIQFSGDAEIHLDSFLSVFNISGLPEEYYHNSQLSKEVDGFVDGAVIAAARTLPTWSDGDMPSVPSRERKAARVLQEECQQLLAEFPTTSDQDQQILDSMPEARRTLEAAIRYRLHRKLFLEKVIQALEIYQRRILF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02072 475 Gene3D - 348 472 IPR036464 -
Eupl04g02072 475 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 60 448 - -
Eupl04g02072 475 ProSiteProfiles SET domain profile. 82 316 IPR001214 GO:0005515
Eupl04g02072 475 Gene3D set domain protein methyltransferase, domain 1 76 330 - -
Eupl04g02072 475 CDD SET_LSMT 83 330 - -
Eupl04g02072 475 FunFam Plastid transcriptionally active 14 352 472 - -
Eupl04g02072 475 Pfam SET domain 92 315 IPR001214 GO:0005515
Eupl04g02072 475 Pfam Rubisco LSMT substrate-binding 403 456 IPR015353 -
Eupl04g02072 475 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 327 467 IPR036464 -
Eupl04g02072 475 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 76 330 - -
Eupl04g02072 475 SUPERFAMILY SET domain 91 330 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl04g02072 SET 9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02072 - - nnu:104599763 794.267