Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02065 ATGAACCCAGACAAGAAATCTTCACAATTCAAATGGGTTTTGCAGCAAATAGATTTTCACCCTGAAAACAAAGATACCCTTTTGTCTTTCTTGTTTGGTAGGGTGATTTTCTCTTCCTTTCTAAGTATGTTTGGAGAAATGGGTGTTGGAAATTTGTGGGTGCTGTTCATTCTTCTGGGGTTCTGTTTCCAAGCTCAGGTCTTGAATTGTCAGAATCAAACCTGCAATTCAGGTGACCTGAGAGCATTGGTGGGTTTCTTGAAGGGTTTGGAATCAGAGAATGTTGGGTGGGGTGCCACCACAAATTCTTCCTCTTCTTCTGATTGTTGTAGTTGGGTTGGGGTTCACTGCAATTCATCGAGGGTTACCAGGTTAGAACTTGTGGGGAAAAGATTAAAAGGGTTCATCTCTGAATCCTTGGCTGATTTGGATCAGCTGAGATTACTGAATCTCTCTCACAATGTCCTCAGAGGTCCCCTTCCAGTGAAACTGTTCCAGTTGAAATATTTAGAGGTCCTCGATTTGAGTTACAATGATTTTACTGACTCGATACCAGCAGAGCCTGATCTACCCTCTATTCAATTTCTCGACGTTTCGGAAAATTTTTTTACCGGTACCATTAACACAGGTATTTGTAGAAACTCAACCCGAATTCAAGTTCTTGATCTCTCCATGAACTACCTTTCCGGAAATTTTCCAGCTGGTTTTGGGAATTGTAGTTCCCTACAGAATCTCTCCCTCAGTTCGAATTTTCTCTCAGGGAGTTTGCCCGAAGATTTGTTCTTGCTACGAAAGTTGAACCAGTTGTATCTTCAGGATAATATGCTTTCAGGGCCACTAAGTGATGGAATCCAAAACCTTTCTAACCTTGTCCAACTGGATATCTCCATGAACAAGTTTTTGGGAGTTCTCCCGGATGTTTTTGGGAGCCTGGGAAAGCTAGAGCATCTTTCTGCCCATTCAAATAATTTCTCTGGCCGTATACCCGTCTCCTTATCAAACTCCCCCACAGTCCAGTTGCTTAATCTGAGGAACAATTCTCTGAATGGCTCCATAGATATTAATTGTACAGCAATGGTTCGTTTAAGCTCCCTCGATCTTGCTACAAATCAGTTCCTTGGGCCCCTTCCCGATAATCTCTCACTTTGTCGAGAACTGAGAGCTATAAATCTTGCCCGGAATAACCTCAACAGCCCAGTCCCCGAGAGCTTCAAGAACCTCAAATCCCTAACCTACCTCTCACTCTCGAATACCAGTCTCCATAATATTTCAGTTGCCCTTGGGATTCTACAACAATGCAGGAACCTAACGACTCTGGTTCTCACCTTGAACTTCCGTGGTGAGGCTATGCCTGCAGATGCGAATCTACAGTTTGAGAACTTGAAGGCTCTCATAATTCCAAATTGTGGTCTCACTGGTTTGATCCCACAATGGTTGAGCCGCAGCACCAAGTTGCAGTTGTTGGATCTGTCATGGAACCACTTGGATGGGGCCATTCCGAACTGGTTAGGTGAGTTAGAATCCCTCTTTTACTTGGATTTGTCAAATAACTCTCTTTCTGGGGAGATCCCAAAAAGCTTGACCAAACTGGAGAGCCTCATCAACCGCAATATCTCATTGGAAGAGCCCTCCCCGGACTTCCCGTTTTTCATCAAACGGAACCAAAGTGCAAGGGGATTGCAGTATAATCAGATTTTGAGCTTCCCACCATCTTTGGATTTGAGCTATAACGAGCTCACAGGAACGATCTGGCCAGAGTTTGGGGATTTGAAGAAGATCCATGTGTTGGATCTGAAATGGAATCGTCTCTCAGGATACATTCCCAATGAGTTATCTGGTATGGCGAGCTTAGAGACTTTGGATTTGTCCCATAATAATCTATCTGGAATCATACCCCCTTCGCTGACCAAACTCAACTTTCTATCGAGCTTCAGTGTTGCGTACAATCACTTGTTCGGGAAGATCCCTTCAGCAGGTCAGTTTTTAACTTTTCCGGCCTCAAGCTTCGAGGGAAACAAGGGTCTCTGTGCTGATCATGCTAACCCTTGTCCCCGTCCACCCCACCATATTGCTCCCAATTCATCCAACAAAATAGGGAGAAAAAACAAAGGGATTATAGTGGGAATGGCCATTGGGATTGGATCAGGGACGACCTTTCTTCTCGTCCTCATATTCTTGATCGTTGTGAGAACCCACAGCCGGAGACAGGATGATCTTGAAACAAAAGACATTGATGCCACCAGTAAAGATTTGGAAGTATCGGGGTCGAGATTGGTGGTTCTGTTTCAAAACAAAGAGAATTATAAAGAGCTCTTTATTGAAGACCTGCTGAAATCCACTAACAACTTCGACCAAGCAAACATCATTGGATGTGGGGGCTTTGGTCTGGTCTACAAAGCAACCCTGCCGGATGGGAGGAAGGTTGCAATCAAACGGCTCTCTGGTGACTGTGGACAGATGGATAGAGAATTCCAAGCTGAAGTTGAAGCCCTCTCAAGAGCTCAGCATGAGAACCTCGTCCTCCTTCAAGGATATTGCAGGTACCGGAATGATAGACTCTTAATCTACTCTTACATGGAGAATGGAAGCTTGGACTATTGGCTACACGAGAAGCTCGATGGTGCTTCCTCACTAGATTGGGAAACAAGACTACGGATAGCTCAAGGGGCAGCGAAGGGATTGGCATACTTGCACCAGTCATGCCAGCCCCAAATCCTACACCGGGATATCAAATCAAGTAACATCCTTCTTGATGAGAACTTTGAAGCCCATTTAGCCGATTTTGGACTCGCAAGGCTCATACTCCCATATGAAACCCATGTTACCACAGACCTAGTTGGAACTTTGGGCTACATCCCTCCTGAGTATGGCCAAGCTTCAGTTGCCACTTTTAAAGGGGACGTGTATAGTTTTGGGGTTGTTCTCTTGGAGCTTCTCACTGGGAAGAGGCCAATGGATATGTGCAAGCCAAAAGGGTGCCGGGATTTGATCTCATGGGTGCTTCAGATGAAGAAGGAGAAGAGGGAAGCTGAGGTGTTCGATCCATTCCTCTATGACAAGCTAAGTGATAAGGAAATGTTACTGGTTCTTGAAATCGCTTGCCTTTGCTTGAGTGAGTACCCTAAAGTGAGGCCATCCACCCAACAGATAGTCTCATGGCTCGACAACATTGATCTCAGTAGCTAA 3186 0.4488 MNPDKKSSQFKWVLQQIDFHPENKDTLLSFLFGRVIFSSFLSMFGEMGVGNLWVLFILLGFCFQAQVLNCQNQTCNSGDLRALVGFLKGLESENVGWGATTNSSSSSDCCSWVGVHCNSSRVTRLELVGKRLKGFISESLADLDQLRLLNLSHNVLRGPLPVKLFQLKYLEVLDLSYNDFTDSIPAEPDLPSIQFLDVSENFFTGTINTGICRNSTRIQVLDLSMNYLSGNFPAGFGNCSSLQNLSLSSNFLSGSLPEDLFLLRKLNQLYLQDNMLSGPLSDGIQNLSNLVQLDISMNKFLGVLPDVFGSLGKLEHLSAHSNNFSGRIPVSLSNSPTVQLLNLRNNSLNGSIDINCTAMVRLSSLDLATNQFLGPLPDNLSLCRELRAINLARNNLNSPVPESFKNLKSLTYLSLSNTSLHNISVALGILQQCRNLTTLVLTLNFRGEAMPADANLQFENLKALIIPNCGLTGLIPQWLSRSTKLQLLDLSWNHLDGAIPNWLGELESLFYLDLSNNSLSGEIPKSLTKLESLINRNISLEEPSPDFPFFIKRNQSARGLQYNQILSFPPSLDLSYNELTGTIWPEFGDLKKIHVLDLKWNRLSGYIPNELSGMASLETLDLSHNNLSGIIPPSLTKLNFLSSFSVAYNHLFGKIPSAGQFLTFPASSFEGNKGLCADHANPCPRPPHHIAPNSSNKIGRKNKGIIVGMAIGIGSGTTFLLVLIFLIVVRTHSRRQDDLETKDIDATSKDLEVSGSRLVVLFQNKENYKELFIEDLLKSTNNFDQANIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEVEALSRAQHENLVLLQGYCRYRNDRLLIYSYMENGSLDYWLHEKLDGASSLDWETRLRIAQGAAKGLAYLHQSCQPQILHRDIKSSNILLDENFEAHLADFGLARLILPYETHVTTDLVGTLGYIPPEYGQASVATFKGDVYSFGVVLLELLTGKRPMDMCKPKGCRDLISWVLQMKKEKREAEVFDPFLYDKLSDKEMLLVLEIACLCLSEYPKVRPSTQQIVSWLDNIDLSS* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02065 1061 SUPERFAMILY Protein kinase-like (PK-like) 765 1054 IPR011009 -
Eupl04g02065 1061 ProSitePatterns Protein kinases ATP-binding region signature. 789 811 IPR017441 GO:0005524
Eupl04g02065 1061 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 115 307 - -
Eupl04g02065 1061 Gene3D Ribonuclease Inhibitor 79 188 IPR032675 -
Eupl04g02065 1061 FunFam Leucine-rich repeat receptor-like protein kinase 859 1061 - -
Eupl04g02065 1061 Gene3D Ribonuclease Inhibitor 280 381 IPR032675 -
Eupl04g02065 1061 Gene3D Ribonuclease Inhibitor 189 279 IPR032675 -
Eupl04g02065 1061 Gene3D Ribonuclease Inhibitor 383 690 IPR032675 -
Eupl04g02065 1061 FunFam Tyrosine-sulfated glycopeptide receptor 1 356 687 - -
Eupl04g02065 1061 SMART serkin_6 783 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g02065 1061 Pfam Protein kinase domain 785 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g02065 1061 SUPERFAMILY L domain-like 107 444 - -
Eupl04g02065 1061 ProSiteProfiles Leucine-rich repeat profile. 616 639 IPR001611 GO:0005515
Eupl04g02065 1061 Gene3D Phosphorylase Kinase; domain 1 745 858 - -
Eupl04g02065 1061 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Eupl04g02065 1061 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515
Eupl04g02065 1061 Pfam Leucine rich repeat 571 627 IPR001611 GO:0005515
Eupl04g02065 1061 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515
Eupl04g02065 1061 Gene3D Transferase(Phosphotransferase) domain 1 859 1060 - -
Eupl04g02065 1061 ProSiteProfiles Protein kinase domain profile. 783 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g02065 1061 ProSiteProfiles Leucine-rich repeat profile. 241 263 IPR001611 GO:0005515
Eupl04g02065 1061 PRINTS Leucine-rich repeat signature 509 522 - -
Eupl04g02065 1061 PRINTS Leucine-rich repeat signature 614 627 - -
Eupl04g02065 1061 PANTHER LEUCINE RICH REPEAT KINASE 2 321 1058 - -
Eupl04g02065 1061 SUPERFAMILY L domain-like 336 670 - -
Eupl04g02065 1061 FunFam Phytosulfokine receptor 1 745 858 - -
Eupl04g02065 1061 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Eupl04g02065 1061 Pfam Leucine rich repeat N-terminal domain 78 118 IPR013210 -
Eupl04g02065 1061 SMART LRR_typ_2 143 167 IPR003591 -
Eupl04g02065 1061 SMART LRR_typ_2 407 430 IPR003591 -
Eupl04g02065 1061 SMART LRR_typ_2 239 263 IPR003591 -
Eupl04g02065 1061 SMART LRR_typ_2 590 613 IPR003591 -
Eupl04g02065 1061 SMART LRR_typ_2 614 638 IPR003591 -
Eupl04g02065 1061 SMART LRR_typ_2 311 335 IPR003591 -
Eupl04g02065 1061 SMART LRR_typ_2 287 310 IPR003591 -
Eupl04g02065 1061 SMART LRR_typ_2 359 383 IPR003591 -
Eupl04g02065 1061 SMART LRR_typ_2 506 530 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02065 Eupl-Chr4 49510350 49514088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02065 190 658 Receptor kinase-like Gene Family AT1G55610 28.631 1.33e-27 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Eupl04g02065 Pkinase 3.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02065 - - nnu:104592703 1409.43