Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02058 ATGAAGCTTTCGACGTCGTCAGGGTTGGGTCAGCAGGGACAGGAAGGGGAGAAGAGATGTTTGAATTCGGAGCTTTGGCATGCTTGCGCTGGCCCTCTTGTGTCCCTACCGACGGTCGGTAGTCGTGTTGTCTACTTCACCCAGGGCCACAGCGAACAGGTTGCTGCTTCAACGAACAAAGAAGTCGATAGCCATATCCCCAATTATCCAAGCCTGCCTCCTCAGCTGATCTGCCAACTCCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACTTTGCAGCCGTTGACGCCACAAGAGCAAAAGGATACTTATCTCCCTGCAGAACTGGGTATTCCGAGCAAGCAGCCAACCAATTATTTCTGCAAGACTTTAACTGCTAGTGACACTAGTACTCATGGAGGGTTCTCCGTGCCTCGTCGTGCTGCCGAGAAAGTGTTTCCTCCACTGGATTTCTCTCAGCAGCCTCCAGCTCAGGAACTTATTGCAAGGGATCTTCATGATGTTGAGTGGAAGTTTAGGCATATTTTCCGAGGACAGCCCAAAAGGCATCTTCTTACTACAGGCTGGAGCGTGTTTGTCAGCGCGAAGAGACTTGTTGCTGGGGATTCTGTTCTTTTTATTTGGAATGAAAAAAACCAGCTACTATTGGGTATCCGCCGTGCCAGTCGACCGCAAACTGTGATGCCTTCATCTGTTTTATCAAGTGATAGTATGCACATCGGACTCCTTGCTGCCGCAGCTCATGCTGCTGCGACTAATAGCCGTTTCACAATTTTTTATAATCCAAGAGCTAGTCCATCTGAGTTCGTCATACCCCTCTCAAAGTACGCCAAAGCGGTATTTCACACTCGTGTATCCATTGGGATGCGTTTCCGAATGCTCTTTGAGACAGAAGAATCAAGTGTCCGTAGGTACATGGGTACGATTACTGGCATAAGTGATTTGGATCCTGTTCGTTGGCCCAATTCTCATTGGCGGTCAGTCAAGGTTGGTTGGGATGAGTCAACAGCAGGTGAGAGACAGCCAAGAGTGTCTCTGTGGGAAATCGAGCCTTTAACAACTTTTCCCATGTATCCGTCATTGTTTCCCCTTAGGCTGAAACGGCCTTGGCATCCTGGAGTGTCTTCTCTGCATGACAATAAAGATGATGCAATGAATGGCCTCATGTGGCTGAGAGGGGATGCTGGAGATCGAGGTTTACAGTCCATGAACTTTCAGGCACTTGGTGTGGGCCCCTGGCTGCAGCAGAGACTTGATCCATCACTCCTAGGAAATGAACATGATCAGCAGTACCAAGCCATGGCAGCAGCTGCTTTGCAGGATATAAGAAGTGGTGATCCTCTGAAACAGCAATTTCTGCAGTTTCAGCAGCCTTGTCAATACCTTCAACAGTCATACAGACCGAATCCACTGTTGCAGCAGCAAATTATTCAACAAACACATCCTCAGCAGATTCTGTATCCACAGACACAAAATTTACCAGAGAACCAACCCCGGCACCTCCTGCAGCAGCAATTGCAGCAACCACTTAATGGCCAGCTGAAGCAACAGGCACAACAACAGCAACAAACTTATCAAGAGGCATTTCAGATTCCAAACAATCATCTCCAGCAGCAACAATCACCATTGCCTGCTCCATTGTGTCAAAAACCAGACTTTACAGATTCAAATATAACCTACTCAGCGGCCCTAAGTCCTTCCAGTATACAGAACATGTTGGGTTCACTGTGTCCTGAAGGGAGTGGCAATCTTCTGAACTTCTCAAGAATCAATCAGTCCATGTTGAGTGACCAGCAGAACCAGCAACCATGGGCACCCAAATTTGCTTATTCACAAGTCAATACTTTTGGCAACTCGGTATCACTCCCACCTTTCCCGGGAAAGGATGGTGCTCTGGAGCCAGACAATTGTAGTGGAGATGCCCAGACCCATACGCTTTTCGGTGTTAACATCGACTCTTCCCCACTCCTACCCAGTGCAGTCCCCAGTCTAGTTACCTCTTCAATCGATGCTGATGTGTCCACCATGCCATTCGGAGCTTCTGGGTTTCAGAGTTCTCTCTATGGTTGCATGGACGACTCGTCTGATTTGATGCACAGTGCAGGGCAAGTTGACCCACCGACCAGAACATTTGTCAAGGTTTACAAAGCTGGGTCAGTTGGGAGGTCACTGGACATCACCCAGTTTAGCAGCTATAGTGAGCTGAGAGAGGAGCTGGGTCAGATGTTTGGGATTGAGGGGCAGCTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGGACGATATACTTCTCCTTGGAGACGACCCATGGGAGGCATTTGTAAATAATGTCTGGTATATCAAGATACTTTCTCCTGAGGATGTGCACAAACTAGGGAGGCAAGGAGTTGAGTCCTTAAGCCCACATGGAGGTCAAAGGTTGAGTGGTAGCTGTGACTCTCGTAACCTTGTGTCTGGGATACCTTCTGTTGGCTCACTTGAATATTGA 2529 0.4824 MKLSTSSGLGQQGQEGEKRCLNSELWHACAGPLVSLPTVGSRVVYFTQGHSEQVAASTNKEVDSHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTYLPAELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYAKAVFHTRVSIGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSLHDNKDDAMNGLMWLRGDAGDRGLQSMNFQALGVGPWLQQRLDPSLLGNEHDQQYQAMAAAALQDIRSGDPLKQQFLQFQQPCQYLQQSYRPNPLLQQQIIQQTHPQQILYPQTQNLPENQPRHLLQQQLQQPLNGQLKQQAQQQQQTYQEAFQIPNNHLQQQQSPLPAPLCQKPDFTDSNITYSAALSPSSIQNMLGSLCPEGSGNLLNFSRINQSMLSDQQNQQPWAPKFAYSQVNTFGNSVSLPPFPGKDGALEPDNCSGDAQTHTLFGVNIDSSPLLPSAVPSLVTSSIDADVSTMPFGASGFQSSLYGCMDDSSDLMHSAGQVDPPTRTFVKVYKAGSVGRSLDITQFSSYSELREELGQMFGIEGQLEDPLRSGWQLVFVDREDDILLLGDDPWEAFVNNVWYIKILSPEDVHKLGRQGVESLSPHGGQRLSGSCDSRNLVSGIPSVGSLEY* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02058 842 Gene3D - 292 364 - -
Eupl04g02058 842 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl04g02058 842 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Eupl04g02058 842 SMART B3_2 128 230 IPR003340 GO:0003677
Eupl04g02058 842 FunFam Auxin response factor 713 806 - -
Eupl04g02058 842 Gene3D - 714 806 - -
Eupl04g02058 842 ProSiteProfiles PB1 domain profile. 717 801 IPR000270 GO:0005515
Eupl04g02058 842 FunFam Auxin response factor 292 364 - -
Eupl04g02058 842 Gene3D - 126 229 IPR015300 -
Eupl04g02058 842 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Eupl04g02058 842 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 806 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl04g02058 842 CDD B3_DNA 127 228 IPR003340 GO:0003677
Eupl04g02058 842 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Eupl04g02058 842 SUPERFAMILY CAD & PB1 domains 711 791 - -
Eupl04g02058 842 Pfam AUX/IAA family 713 804 IPR033389 -
Eupl04g02058 842 FunFam Auxin response factor 126 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02058 Eupl-Chr4 49274451 49297770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02058 98 809 B3 DNA Binding Superfamily AT5G37020 67.406 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl04g02058 AUX_IAA 2.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02058 - - nnu:104592798 1338.94