Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02057 ATGAAAGCGGGGACTCGAGATTCGAGCCAACCCCCAACTACTGCAGAGGACGAGGCCTTGAAGAGGAACACCGATTGCGTTTATTTCCTCGCGTCTCCTTTGACTTGCAAAAAGGGAAGTGAATGTGAATATCGGCACAGCGAAAATGCCAGGATTAACCCTCGGGATTGCTGGTACTGGTTGAGTGGTAACTGCTTGAATCCAAAATGTTCTTTCCGACATCCGCCACTCGATGGTTTGTTAGGAACTCCTGGGGCAACTTCTGTGGGATCATCTCTGCCTCCTCCACAGACTGCACCATCAACACCATTGCCTGCACCATCAACACAATTGCCTGCAGCTCATACTCCTGCTTATAATTCGGGTAAACAAGCCATTCCCTGCTTTTACTTCCAGAAGGGACAATGTTTAAAGGGTGACCGATGCCCCTTCGTGCATGGACCACAGCCGATTGATAATCTGGTCCAACAGCCGGTGGTGCCAAAAGTTGCTGTATCTGTTACTGAGACTCGCACTCTTAAGAAGGATCTAGGGGGACTTGAGAAGTGTATCCAGCAGCAGAAGATCCCACAATTAAACATCATAAAGCCAGTTGAAGTACCACCTCCAGCAAAACCACATACAAAATCTGAACCTGCAGCGTCGAAAAACGGAATAGCAGTTAAGAAAACTATGCCACCACCAACCTTGTTGGATCATGATTTTCCAAGGTACAAACAAACAAATGTTCCTCCAGTCATTGGTGGAAATTCTGCAAGTAGGACCCACCGAGGTCGTCAAGTTCAGTCCTTGGATGAACGCAGTTTCCAGAATGGTAAGGAGCCTGATGAGTTCTTGGGGGAGTCTTCTCCTGGTTTTGATGTTCTCGTAGATGATGATCTCAGGGATTCTGATTACTACCATACTGAGGACGAATTTGGAGGAATGACGGTTCATGAGGGAAGGCATTTGAACTCTGTGAATGAATTTGATTACAGCCATTCCGCTGATTACGGTTCTCTGGCTAAATTTGACCGAGAACAGTACAACGATCCACGTGGCTACCCATATGGACCGGTGCAAGATCAGTATGCTTGGGAACAGCGCAGGGCTTCATCTGAGAGGATTTCAGAGAGGTCATCTGTACCTGAAAGGAGAGGGTTTTCAAGAGCTGAGAGCCCAGATCAGATTGTTGGGTCGGATCTGCGCCATAGGCTGTCAAAGCAGAGGAAGGTTAATGGGTCGAGATCAGCTGTTAGTCCTGATCATCGTGGCAGCTTCTACAGGAGGGATGATCGTGATCGCCGTGTCGAGGAACAAAGATACCGGGGCCGTTCTCCTAGAGACTCACGCCATTTACATCCTCATGAGAGCTCCATAAGCAATCGCCTACAAGGTAGAATAACGCTCCCTGGGAGATCTTCGCCGGACAGTGACCATAATGATTCTCGTCCAGAGAGAAAAATGGACAGGGGAAGGAACTGGCGCAAATTGTCGCCTGGCAGGCTACCAACATCCTCCTACCAGGGAAGGCTCCAAGACAGACTAAAACGAAGAGTACAAGAGGACTTAACCACAGAGGAGAGAACTTCCAGTGGCCCGCCAATAAGAAGAGAAGAGGTAGACAACACTTTAAATTTTGCCGGTCCAAAAAGCCTAGCAGAGCTGAAAGGTGCAAAGGGTTCTGAGAGCAGTGAAGAGCAGCGAGCAAAGGGTGAACAAGTATTCTCCCTCGGAGAGCAGAAAAACACAAAGATAGGAAAACTTGTGGATCATCAAGAATCCGAAGGTTCTATTTCTTTTGAGGGCCCAAAGCCTCTGAGTGCGATTTTGAAGAGAAAAAGAGGAGCAGAATCCGCGTCATCGGGGAATGGCACAAGTTCTGGCTATGGAGAGGAGAGCAATCAGAGAGAAAGGGTGGAAGACCCGATATATGGTTCGAGGATGATGGCAGTTGCAGAGAAACAGATTAATTTGCCCTCTGAGCCCGGGAAAGAAGCCACCCACCATGCTCTTGGCAGCACGGGAAAACCCAAGTTCACAACTACAGACACTACTAGAACAGTGGATGAAGATGCAGAGGAAGAGGAAGAAGGTCTGATCACTACAGAAGGCGACGAAGTGGCTCATGTAGACCAGTCTTCTGCTCAGAAGGAGAGTGAGCATGTGAAAGAAGACATGATGATGATGGATGCAGTGGATGATCAAGAACTCGAGACCTTTGATCAGAGGGACGGGGAGTCTGACTACGAGCAGGTTGATGGTGGGGACTTCAAGATAGAGGAAGATGAAAATGCCAACCCAGAAGAGGAATACTTGGATGATGACGACGGGGATGACTTTGCAAAGAGGATTGGTGTCATGTTTTCTTAA 2352 0.4821 MKAGTRDSSQPPTTAEDEALKRNTDCVYFLASPLTCKKGSECEYRHSENARINPRDCWYWLSGNCLNPKCSFRHPPLDGLLGTPGATSVGSSLPPPQTAPSTPLPAPSTQLPAAHTPAYNSGKQAIPCFYFQKGQCLKGDRCPFVHGPQPIDNLVQQPVVPKVAVSVTETRTLKKDLGGLEKCIQQQKIPQLNIIKPVEVPPPAKPHTKSEPAASKNGIAVKKTMPPPTLLDHDFPRYKQTNVPPVIGGNSASRTHRGRQVQSLDERSFQNGKEPDEFLGESSPGFDVLVDDDLRDSDYYHTEDEFGGMTVHEGRHLNSVNEFDYSHSADYGSLAKFDREQYNDPRGYPYGPVQDQYAWEQRRASSERISERSSVPERRGFSRAESPDQIVGSDLRHRLSKQRKVNGSRSAVSPDHRGSFYRRDDRDRRVEEQRYRGRSPRDSRHLHPHESSISNRLQGRITLPGRSSPDSDHNDSRPERKMDRGRNWRKLSPGRLPTSSYQGRLQDRLKRRVQEDLTTEERTSSGPPIRREEVDNTLNFAGPKSLAELKGAKGSESSEEQRAKGEQVFSLGEQKNTKIGKLVDHQESEGSISFEGPKPLSAILKRKRGAESASSGNGTSSGYGEESNQRERVEDPIYGSRMMAVAEKQINLPSEPGKEATHHALGSTGKPKFTTTDTTRTVDEDAEEEEEGLITTEGDEVAHVDQSSAQKESEHVKEDMMMMDAVDDQELETFDQRDGESDYEQVDGGDFKIEEDENANPEEEYLDDDDGDDFAKRIGVMFS* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02057 783 Gene3D - 12 77 - -
Eupl04g02057 783 Gene3D - 113 186 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 452 469 - -
Eupl04g02057 783 Pfam RNA-binding, Nab2-type zinc finger 127 147 - -
Eupl04g02057 783 Pfam Zinc-finger containing family 21 75 IPR041686 -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 259 274 - -
Eupl04g02057 783 ProSiteProfiles Zinc finger C3H1-type profile. 51 77 IPR000571 GO:0046872
Eupl04g02057 783 ProSiteProfiles Zinc finger C3H1-type profile. 122 149 IPR000571 GO:0046872
Eupl04g02057 783 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 16 783 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 733 755 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 83 116 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 416 451 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 756 770 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 612 626 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 505 529 - -
Eupl04g02057 783 ProSiteProfiles Zinc finger C3H1-type profile. 20 49 IPR000571 GO:0046872
Eupl04g02057 783 MobiDBLite consensus disorder prediction 733 773 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 470 490 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 200 287 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 244 258 - -
Eupl04g02057 783 SMART c3hfinal6 21 48 IPR000571 GO:0046872
Eupl04g02057 783 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Eupl04g02057 783 SMART c3hfinal6 53 76 IPR000571 GO:0046872
Eupl04g02057 783 SUPERFAMILY CCCH zinc finger 123 147 IPR036855 GO:0046872
Eupl04g02057 783 FunFam Zinc finger CCCH domain-containing protein 17 14 77 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 359 639 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 652 717 - -
Eupl04g02057 783 MobiDBLite consensus disorder prediction 361 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02057 Eupl-Chr4 49255452 49260288 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl04g02057 zf-CCCH_3 1.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02057 - - nnu:104589392 793.882