Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02028 ATGGCCGAAGAATTCTCTGCTGCAAACTCATCCTCTACACCGAACTCGTGGGAGCAGCGACATCCTTGTTCTCTCTCTTCATGGCATCCTCCAAACCCTAGTTCCAACTTTTCTTCTGAGGAGAAGCTCTCAATCTTAAACTCTTTCGCCAATTCCTCCAATCATTCCACCGCAGTTGCTGACCATCCATCTTGCCAACTCAATCAACCCGAGTACGAGGATCATCTTTGGGACCTGGTTTTATTAAGTGCAGGGATCGGCGGAAATACATACAACAGTAAAGATTTTGGAGAGAACTTTCTTGTGACACTCTTGGGAATGGAAAACTGTTGTGAATTCATGAACTCCACATCTTTTCATGACTTAGAGACACAATTTAACATCTTTAATGGGAGCTTGCTTGAACATGAAAGGCTAACCAACTTGTCGAATTTGATAAGCAACTGGTCTATTTCCCCTCCAGACCCAAAAGTCGACAACAAAAATGTACCACCAACATGTCATATGTCTTCGATTTCTTCCATGGAAGACTACTCAAAGCCCAATCTTTCTCAAATGAAGCAAAACCTATTCAGTTCAGTCATAGGAGAGAACAACAAATACTACTATGGCATGTCAAATGTGCCATGGTCTAATTTCTCAGATCCTATCTCATTTGGTGGTTGTTTAAACAAGCCATTGGTGGATATCCAGTCCTCTAATAATTATTTAATAGCCTCAACATCATCAGACAGTGAGAAGCAAGGGCGTGGGACTTCTTTCTCGGTTAGAGGAAACGAGAGTGAATGCAAAATTGCAAGCGAAGGGACGAAGAAAACATGTGTAGACAGTTCAAAGAAACTATTGGAAAAGCCCAAGTATGAGAGCTCTATAATCTCATCTGTCAAGGTACATGATCCAAAAGCAAAGTTGGGAGATAGAATTACTGCCCTTCACAAACTTGTGACGCCTTTTGGAAAGAGGGATACAGCATCCGTGCTACAAGAAACAATTGGGTATATAAATTTTTTACAAGATCAAGTGCAGGTACTTTGCAGCCCATACTTAAGGTCAAATGCAAAGGAGGATCCATGTGGAGGGCTAGAGAGAAAGGATAAAGCAAAGGCAAAAGTCGATCTTAAGAGTAGAGGGCTTTGTCTAGTTCCTATTTCTTGTACTTTTCAAATTTACCAAGATAAATGTGATTAG 1188 0.4099 MAEEFSAANSSSTPNSWEQRHPCSLSSWHPPNPSSNFSSEEKLSILNSFANSSNHSTAVADHPSCQLNQPEYEDHLWDLVLLSAGIGGNTYNSKDFGENFLVTLLGMENCCEFMNSTSFHDLETQFNIFNGSLLEHERLTNLSNLISNWSISPPDPKVDNKNVPPTCHMSSISSMEDYSKPNLSQMKQNLFSSVIGENNKYYYGMSNVPWSNFSDPISFGGCLNKPLVDIQSSNNYLIASTSSDSEKQGRGTSFSVRGNESECKIASEGTKKTCVDSSKKLLEKPKYESSIISSVKVHDPKAKLGDRITALHKLVTPFGKRDTASVLQETIGYINFLQDQVQVLCSPYLRSNAKEDPCGGLERKDKAKAKVDLKSRGLCLVPISCTFQIYQDKCD* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02028 395 CDD bHLH_AtbHLH_like 301 344 IPR045239 -
Eupl04g02028 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Eupl04g02028 395 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 79 388 - -
Eupl04g02028 395 MobiDBLite consensus disorder prediction 1 36 - -
Eupl04g02028 395 Gene3D - 301 355 IPR036638 GO:0046983
Eupl04g02028 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 351 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02028 Eupl-Chr4 48386849 48393279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02028 266 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 45.312 4.03e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02028 - - nnu:104606990 326.635