Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02027 ATGGCTGAAGAAGGCTCTGAAGGCTCCGTTGCAAACTCATCATCTACACAAAACTTGTGGGAACTCCATGCCAGTTCTCTCCCTTCATGGAATAATGTCATCCCATGGCACCCTCCAAACCCTAATTCCAACTCTTCTTGTGAGGAGGAGATCTCAATCTCAACCTCTTTCACCAACACCTCCAATCACTCCGGCCTAAGCGTCGACTCATCTCGCCAACTCATTGAACCAGCCTCCAATGATTTAAGGGGAGAACCTGCTGCATCTGAGAATCATATTTGGAGCCAGGTTTTATTAAGTGTTGGGAGCAATGGAGACTTACATAACAGTCAAGATGTTGGGGAGAACTTTCTTGATCAGGCACTGTCATCAAAGAACCTATCAGCCGAGATGTTTGAACCAGCCTGTGATTACTTGAAGAAAATGGATAACTGTTGGGAATTCACAAACTCTACATCTTTTAACTTAGAGAAGCAGTTAAACATCTTTAATGGGAGCTTGCTGGAACACGAAAGGCTGAGCAACTTGTCGAATTTGGTTAGCAACTGGTCTATTGCCCCGCCAAACCCAGATGTCGATCGCCACACTACTCCACCGACATGTAATATATCTCTGAATTCCATCGACCAGTACTCAGAGCCTGATCTTTCTCAAGTGAAGCAGAACCTGTCCAATTCATCATCATATGGAGTAGCGGCGGGAAATAGGAATTCTGGTTTCGTGCCATGTTATGGTCATGATCTGAAAGTGGAGAGCCAACCCCAAGAAATTGATGCATCCGACGCTTCATTTCAGAGGTCGTTTAAGAATAACAGTATTAGATACCAAGTGGGTCATAACAGCTCAGTTATAGGAGACAACAACAAATACTACTATGCAATGTCAGATGTGCCATGGTCTAATACAAGGAATTTGTCCGATCTTATTTCATTTGGTGGTTGTTTAAACAAGCCATTGGTGGACATTCAAGCCTCTAAACCTTGTTTAAAAGCCTCAAATTCACCAGACAGTAAGAGGCAAGGACATGACACTTCTTTGCCGGCAAGAGGAAATGGGAGAGGATCCGGAATTACAAGTGAAGGGAAGAAAAAAAGATCTGAAGACACTTCAGAAACACAATTTAAGAAGCCTAAGCATGAGAGCTCTACGGTCTCATCTCTCAAGGTACAGGCTCCTAAAGTCAAGCTGGGAGATAGGATCACTGCCCTTCAACAAATTGTGTCACCTTTTGGAAAGACTGATACTGCATCTGTTCTACAAGAAGCAATTGGGTATATAAATTTTTTACAAGAACAAGTGCAGCTACTTTGCAATCCGTACATGAAGTCGAATGCAAACAAGGGTTTAATTCAAGATCCATGGGGAGGATTGGACAGAAAAGATAAAGCGGAGGCGAAAATTGATCTGAAGAGTAGAGGGCTTTGTCTAGTTCCTATTTCCTGTACTCCTCAAGTTTATCGAGAGAATAATACAGGATCAGATTACTGGACACCAACATATAGGGGATGCTTGTATAGATGA 1521 0.428 MAEEGSEGSVANSSSTQNLWELHASSLPSWNNVIPWHPPNPNSNSSCEEEISISTSFTNTSNHSGLSVDSSRQLIEPASNDLRGEPAASENHIWSQVLLSVGSNGDLHNSQDVGENFLDQALSSKNLSAEMFEPACDYLKKMDNCWEFTNSTSFNLEKQLNIFNGSLLEHERLSNLSNLVSNWSIAPPNPDVDRHTTPPTCNISLNSIDQYSEPDLSQVKQNLSNSSSYGVAAGNRNSGFVPCYGHDLKVESQPQEIDASDASFQRSFKNNSIRYQVGHNSSVIGDNNKYYYAMSDVPWSNTRNLSDLISFGGCLNKPLVDIQASKPCLKASNSPDSKRQGHDTSLPARGNGRGSGITSEGKKKRSEDTSETQFKKPKHESSTVSSLKVQAPKVKLGDRITALQQIVSPFGKTDTASVLQEAIGYINFLQEQVQLLCNPYMKSNANKGLIQDPWGGLDRKDKAEAKIDLKSRGLCLVPISCTPQVYRENNTGSDYWTPTYRGCLYR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02027 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 429 IPR011598 GO:0046983
Eupl04g02027 506 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 175 485 - -
Eupl04g02027 506 MobiDBLite consensus disorder prediction 358 382 - -
Eupl04g02027 506 CDD bHLH_AtbHLH_like 395 436 IPR045239 -
Eupl04g02027 506 Gene3D - 393 448 IPR036638 GO:0046983
Eupl04g02027 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 395 443 IPR036638 GO:0046983
Eupl04g02027 506 MobiDBLite consensus disorder prediction 330 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02027 Eupl-Chr4 48344972 48348325 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02027 40 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 31.697 1.76e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02027 - - nnu:104606990 685.256