Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02019 ATGAAAATGAAGCGTGTATTTGATGAAATCTCCGACGATGAGTGGGAGAATCACACATTTAAGCCGTCGAGGATCCTCAAGAAGGGACCCTCTCCTCCTCCGATTGAATCCTTCAAGTATCGTTCGAAGAATCGTGAGAATTCCGACAGAAGTAGCGGAGATTTTGTCCAAATGAAGGAAAGTTTAGAGGACGACGACGTGGACTTAACGGAAGTCCGGCCTCAGGGGAACCGGTCCCGAAGATTCGTCTTAGACGAAGATAGCGACGAGGATTTTGCAGAAGTGTTTGAAATCCGGTCGACGGAAGAGGAGATCGAACCGGTTGACTTGGAAGAAGAAGAGGGCGAGGAGGAGGATGTTGTTGGGAAGGCTTTGCAGAAATGTGCAAAGATATCGGCGGAGTTGCGGCAAGAGCTCTATGGCTCTTCCGTGTCCTCTTGCGAGAGATACGCTGAAGTTGATGCTTCTTCTGTGAGGATTGTGACACAGGATGATATTGATGCAGCTTGTGTGACAGAAGAATCGGATTTTCAGCCAATTCTTAAACCTTACCAGCTCGTTGGTGTCAACTTTCTTCTTCTGTTGTATAGAAAGAATATTGGGGGAGCCATCTTGGCGGATGAGATGGGTCTTGGTAAGACCATTCAGGCTATCACATATTTAACTCTGCTGAAACACTTGGACAGTGATCCAGGTCCCCATTTAATTGTCTGCCCTGCTTCTCTTTTGGAGAACTGGGAAAGAGAACTTAACAAGTGGTGCCCATCATTTTCTGTACTCCAGTATCATGGGGCTGGACGAGCAGCCTACTCGAAGGAGTTGAACTCTTTGGCCAAGGCTGGTCTGCCACCTCCATTTAATGTGCTTTTAGTTTGTTACTCACTTTTTGAACGACACAGTGTGCAGCAGAAAGATGACCGTAAGTTGCTGAAGCGCTGGCGATGGAGCTGTGTGCTGATGGATGAAGCTCATGCTTTGAAAGATAAAAACAGCTATAGGTGGAAAAACTTAATGTCTGTTGCACAAAATGCAAACCAGCGTCTTATGCTGACTGGGACACCACTCCAAAATGATTTACATGAGCTGTGGTCATTATTGGAGTTCATGATGCCTGATCTCTTTGCAACTGGAGATGTGGACCTGAAAAAGCTATTGAATGCGGAAGATAGAGAATTGATTGCCCGTATAAAGTCCATTTTGGGACCATTTATTTTGAGACGCTTAAAATCTGATGTAATGCGGCAACTTGTTCCAAAGATACAGCGGGTTCAATATGTAGGCATGGAAAAGCAACAGGATGATGCTTATAAAGAAGCCATTGAGGAGTATCGTGCAGCTTCTCGAGCTCGTATGTCAAAATTATCGGAGGTTACTTCAAATAGTGTTGTTGGAGTTCTTCCACGGCGTCAGATTTCCAACTATTTCGTTCAGCTTCGCAAGATTGCAAATCATCCTTTACTGGTGAGGCGTATTTACAGTGATGAGGATGTTGTTCGTTTTGCTAGAATCTTGTATCCAAAAGGCGCATTTGGCTTTGAATGTACCTTGGAAAGAGTAATTGGAGAGCTTAAGAGTTACAATGATTTTGCTATTCACCGGCTTTTAATGCTGTATGTTGGCACTGAAGCGAAAGGAACTCTTCGAGATGAACATGTATTCCTTTCAGCAAAATGTCAGGCGTTGGCTGAACTTCTTCCCTCATTAAAGAGAGGGGGGCACCGGGTTCTGATTTTCAGCCAGTGGACCTCAATGCTTGATATTCTGGAGTGGACTTTGGATGTCATCGGAGTTACATATAGACGCCTTGATGGCAGCACACAGGTAACAGAAAGGCAAACCATAGTCGACAGCTTCAACAATGACAACTCGATTTTTGCATGCTTGCTATCAACAAGAGCTGGAGGGCAGGGCTTGAACTTAACTGGAGCTGACACTGTAGTCATACATGACATGGATTTCAACCCACAGATGGACCGGCAGGCCGAAGATCGCTGCCACCGCATTGGCCAAACAAAACCTGTCACCATATACAGGCTTGTGACCAAGGGCACGGTTGATGAGAATATTTATGAGATTGCGAAGAGGAAACTGGTTTTGGATGCTGCAGTGCTCGAGTCTGGCATGGAAGTCAACAGTGAAAGTGACATGCCTGAGAAGACTATGGGAGAGATATTATCTGCACTTTTGCTAGGGTAG 2196 0.4526 MKMKRVFDEISDDEWENHTFKPSRILKKGPSPPPIESFKYRSKNRENSDRSSGDFVQMKESLEDDDVDLTEVRPQGNRSRRFVLDEDSDEDFAEVFEIRSTEEEIEPVDLEEEEGEEEDVVGKALQKCAKISAELRQELYGSSVSSCERYAEVDASSVRIVTQDDIDAACVTEESDFQPILKPYQLVGVNFLLLLYRKNIGGAILADEMGLGKTIQAITYLTLLKHLDSDPGPHLIVCPASLLENWERELNKWCPSFSVLQYHGAGRAAYSKELNSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKLLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAQNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATGDVDLKKLLNAEDRELIARIKSILGPFILRRLKSDVMRQLVPKIQRVQYVGMEKQQDDAYKEAIEEYRAASRARMSKLSEVTSNSVVGVLPRRQISNYFVQLRKIANHPLLVRRIYSDEDVVRFARILYPKGAFGFECTLERVIGELKSYNDFAIHRLLMLYVGTEAKGTLRDEHVFLSAKCQALAELLPSLKRGGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQTIVDSFNNDNSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQMDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENIYEIAKRKLVLDAAVLESGMEVNSESDMPEKTMGEILSALLLG* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02019 731 SMART ultradead3 177 382 IPR014001 -
Eupl04g02019 731 MobiDBLite consensus disorder prediction 18 77 - -
Eupl04g02019 731 Pfam SNF2-related domain 198 487 IPR000330 GO:0005524|GO:0140658
Eupl04g02019 731 FunFam Protein CHROMATIN REMODELING 19 isoform A 152 430 - -
Eupl04g02019 731 SMART helicmild6 586 669 IPR001650 -
Eupl04g02019 731 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 560 722 IPR001650 -
Eupl04g02019 731 Pfam Helicase conserved C-terminal domain 557 669 IPR001650 -
Eupl04g02019 731 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 372 IPR014001 -
Eupl04g02019 731 PANTHER SNF2/RAD54 HELICASE FAMILY 56 709 - -
Eupl04g02019 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 407 IPR027417 -
Eupl04g02019 731 CDD SF2_C_SNF 548 680 - -
Eupl04g02019 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 715 IPR027417 -
Eupl04g02019 731 MobiDBLite consensus disorder prediction 39 77 - -
Eupl04g02019 731 CDD DEXHc_Snf 181 374 - -
Eupl04g02019 731 Gene3D - 150 396 IPR038718 -
Eupl04g02019 731 Gene3D - 418 729 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02019 Eupl-Chr4 48024508 48066947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02019 202 696 RAD5 or RAD16-like Gene Family AT5G22750 27.941 1.05e-47 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl04g02019 SNF2_N 5.1e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02019 K14439 - ming:122089352 1228.77