Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02017 ATGGCAGCGGCTTCATCGTCTACACCGTTCTTTGGAATCAGAGACGAAGATCAAAACCAGATGAAACAGCAACAACAGACCTCTACACCAACATCATCAACAACTCCAACCACAGCACCTCAAAAGAAGAAGAGGAATCTCCCAGGAACACCAAATCCAGACGCAGAGGTGATTGCACTATCTCCCAAGACTCTAATGGCCACAAACAGGTTCATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTCCCTTGGAAGCTAAGGCAGAAGACTACAAAAGAGGTGAAGAGGAGAGTGTATCTGTGTCCGGAGCCCACATGCGTCCACCACGACCCTTCCAGGGCTCTTGGCGACCTCACGGGTATTAAGAAACACTTCTGTAGAAAACATGGAGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAACGATATGCAGTGCAGTCTGATTGGAAAGCTCATTCGAAGACATGTGGAACTAGAGAATACAGATGCGACTGTGGTACCCTTTTCTCAAGGCGTGATAGTTTCATCACCCACAGGGCCTTCTGTGATGCACTGGCTCAGGAGAGTGCAAGGCTTCCTACTGGCCTTAACACAATGGGGAGCCATTTATATGGAAGTAGCAACATGGGACTAGGTCTATCTCAAGTGGGTTCCCAAATTTCCTCATTACAAGATCAAAACCACCCATCTAGTGACATGTTACGACTTGGTGGGGCCGGGGGAGCTCAATTTGATAATCTCATCCCTCAATCCAATTCATCATTTCGTCCTCCACAACCCACACCATCATCTGCCTTCTTCCTTCCTGGCTCCAACCAAGACTTCCATGAAGAACACCAATCCCACCATGGGTTATTGCAAAACAAGCCTTTCCATGGGTTGATGCAACTTCCTGATCTCCAAAACAGTGCCAATAACTCTTCTTCTGCTGCCGCGGCCGCCGCTGCCAATCTCTTCAACCTCAGCTTCTTTTCCAATAGCAGCACGACTAGCAGCATTAATAATAGCAACAATGCCAATAATAACAGCCATCTCTCCTCTTCTGGTATGTTAATTCCTGATCAGTTTAACAGTGGGAATGCTGGAGGCGAAGGGCCAAATCTCTTTACTGGCAACATAATGGGTGATCATATGGGTTCAAATGTCTCTTCTCTCTTCAACACTTCTGTGCAAAATGACAATGTCATCCCTCAAATGTCAGCTACTGCATTGCTTCAAAAGGCTGCTCAAATGGGTTCAACTACAAGTGGCAACAGTGTCTCTTTGCTAAGAGGATTTGGTAGCTCTTCTTCAAGCAGTGCCAAATCAGATAGGCCACACATTTCTGCTAATTTTAGGGGAAATTTTGGTGGTGGGGGAGGAGAAAACCTAAGATCACAGATTGAAAATGAAAACCATCTCCAGGACTTAATGAATTCTCTTGCAAATGGGAGTTCTTCAATTTTTGGAGGTGGGTCTGGAGGAGTCACTACATTTGGTGGTAGTTGCACTAGTGGTGGACATGGGCAAGAGACCAGCTTTGGTGGATTTAATGGAAATAGGATTTCACTGGAACAACACCATAATAACACAAATTTGTGTACCATGGACGAAGCTAAGTTGCATCAAAATCTCACGGTGAGCATCGGAGGATCGGATAGATTAACAAGGGACTTTCTAGGTGTTGGGGGGATGGTAAGAAGCATGGGAGGTGGGATGTCGCAGAGAGAACAACATCATGGCATGGACATCAGCTCTTTGGACTCAGAAATAAAATCAGCAGCGGCGGGGAATCGATCTTTCGGAGGTGGGAATTTGCAGTGA 1842 0.4609 MAAASSSTPFFGIRDEDQNQMKQQQQTSTPTSSTTPTTAPQKKKRNLPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLRQKTTKEVKRRVYLCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARLPTGLNTMGSHLYGSSNMGLGLSQVGSQISSLQDQNHPSSDMLRLGGAGGAQFDNLIPQSNSSFRPPQPTPSSAFFLPGSNQDFHEEHQSHHGLLQNKPFHGLMQLPDLQNSANNSSSAAAAAAANLFNLSFFSNSSTTSSINNSNNANNNSHLSSSGMLIPDQFNSGNAGGEGPNLFTGNIMGDHMGSNVSSLFNTSVQNDNVIPQMSATALLQKAAQMGSTTSGNSVSLLRGFGSSSSSSAKSDRPHISANFRGNFGGGGGENLRSQIENENHLQDLMNSLANGSSSIFGGGSGGVTTFGGSCTSGGHGQETSFGGFNGNRISLEQHHNNTNLCTMDEAKLHQNLTVSIGGSDRLTRDFLGVGGMVRSMGGGMSQREQHHGMDISSLDSEIKSAAAGNRSFGGGNLQ* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02017 613 Gene3D Classic Zinc Finger 125 203 - -
Eupl04g02017 613 MobiDBLite consensus disorder prediction 259 283 - -
Eupl04g02017 613 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 581 IPR031140 -
Eupl04g02017 613 FunFam protein indeterminate-domain 12-like 50 118 - -
Eupl04g02017 613 MobiDBLite consensus disorder prediction 11 45 - -
Eupl04g02017 613 Gene3D Classic Zinc Finger 50 118 - -
Eupl04g02017 613 MobiDBLite consensus disorder prediction 439 471 - -
Eupl04g02017 613 SMART c2h2final6 147 167 IPR013087 -
Eupl04g02017 613 SMART c2h2final6 71 93 IPR013087 -
Eupl04g02017 613 MobiDBLite consensus disorder prediction 259 297 - -
Eupl04g02017 613 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Eupl04g02017 613 MobiDBLite consensus disorder prediction 1 55 - -
Eupl04g02017 613 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Eupl04g02017 613 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Eupl04g02017 613 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Eupl04g02017 613 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02017 Eupl-Chr4 47915151 47920051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02017 10 577 IDZ Gene Family AT2G02070 45.586 3.00e-140 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl04g02017 zf-C2H2_jaz 3.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02017 K25870 - nnu:104606980 928.317