Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02006 ATGGATGAAGAGCAAGAAAGAAACCTGGAAACATTTCTAACATGGGCTACAAAGCTGGGAATCACCGACTCACCACCCAATCTCTTGCAATCTGAAACTGAAACTCCCTCCTCCTCCTGTTTGGGCCAATTCCTTTTCGTTTCACACTTCCCGGACGCAGGAGGAAGAGGTTTAGCTGCTGCTCGTCATCTTACAAAACATCAACTTATTCTCAAAGTTCCAAAATCGGCTCTGATAACAAGCGAAAGTTTGATGTTGAGAGATCAGAAACTCTCCATTTCCGTCAAAAGACACCCCCATCTCTCCTCTACTCAGAAATTGAGTGCGTGTTTATTAGCTGAAATGGGTAAAGGAAGGGGTTCTTGGTTGCACCCTTACTTAATGCAGCTGCCTCGCAGCTACGACACACTAGCGAGCTTCACTGGGTTTGAGATTCAAGCTCTGCAGGTGGATGATGCTATCTGGGATGCAGAAAAGGCTATTGCAAAGGCTGAAATGGACTGGCAAGAAGCTGTTCCTCTCATGCGAGAACTCGAGCTCAAGCCGCAACTTTTAACGTTTAGGTCGTGGCTTTGGGCATCAGCAACTATATCCTCTCGTACATTGCATATACCGTGGGATGATGCTGGGTGTTTATGCCCCGTGGGTGACTTATTTAATTATGCTGCACCTGGGGAGGAGTCATTTTGTTCTGAAGATGTAGAAAGTTGGACACGAGCTTCTTCATTGCAAGTCGGTTCATTATGGAAAGATAAGGGTGAAAAAGTGAAGGTAGATGCTGAGCAACTTGATGGGCATTCGCAGAGGTTAACAGATGCTGGCTATGAGGAAGATGTTGATGCATATTGCTTCTATGCCAGGAAAAGATATAGAAAAGGAGAGCAGGTTCTTTTAAGTTATGGAACGTACACAAATTTGGAGCTCCTTGAGCACTACGGGTTTCTTCTAAATGCGAATCTGAATGACAAGGCTTTCATTCAGTTGGAACCAGGCATGCACTCCAATTCATGGCCCAAGGATTCTTTGTATCTCCAACAAGATGGGAAGCCATCATTTGCCCTACTGTCTGCTTTGCGCTTATGGTCGACCCCATTAAACCATAGGAAATCTGTTGGCCACCTTGCTTATTCAGGATCACAACTGTCGGCAGAGAATGAGATGTGTGTCATGAGATGGGTGGGAAAGAAGTGCCGCATCCTTTTGGACAAATTGCCGAGTTCAGTTGAAGAAGACATTTTGTTGCTACAGTTTATTGACAAAATGCAAGATCATCCCTCCCTTCAAGAGGTTGAGCAGATGCTTTTGGCACGTGGAGGTGAGGTGGGTGCTTTCTTTGAAGCCAATGGTTTGCAGAATGGGGGTAATGTTGTCGAGTTTCCATTTCCAAGGAAGGCTAGAAGATCAATGGATAGATGGAAATTGGCTGTTCAATGGAGGCTCAGGTATAAGCAAATACTTGTTGACTGTATTTCTTATTGTACTGAAATTATCAATTATCTTTCTTCTCAACATGTTTCATGCAAGAGAACCAGCAAGACATAA 1542 0.4429 MDEEQERNLETFLTWATKLGITDSPPNLLQSETETPSSSCLGQFLFVSHFPDAGGRGLAAARHLTKHQLILKVPKSALITSESLMLRDQKLSISVKRHPHLSSTQKLSACLLAEMGKGRGSWLHPYLMQLPRSYDTLASFTGFEIQALQVDDAIWDAEKAIAKAEMDWQEAVPLMRELELKPQLLTFRSWLWASATISSRTLHIPWDDAGCLCPVGDLFNYAAPGEESFCSEDVESWTRASSLQVGSLWKDKGEKVKVDAEQLDGHSQRLTDAGYEEDVDAYCFYARKRYRKGEQVLLSYGTYTNLELLEHYGFLLNANLNDKAFIQLEPGMHSNSWPKDSLYLQQDGKPSFALLSALRLWSTPLNHRKSVGHLAYSGSQLSAENEMCVMRWVGKKCRILLDKLPSSVEEDILLLQFIDKMQDHPSLQEVEQMLLARGGEVGAFFEANGLQNGGNVVEFPFPRKARRSMDRWKLAVQWRLRYKQILVDCISYCTEIINYLSSQHVSCKRTSKT* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02006 513 Pfam Rubisco LSMT substrate-binding 344 486 IPR015353 -
Eupl04g02006 513 CDD SET_LSMT 45 315 - -
Eupl04g02006 513 Gene3D - 318 504 IPR036464 -
Eupl04g02006 513 ProSiteProfiles SET domain profile. 39 301 IPR001214 GO:0005515
Eupl04g02006 513 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 8 427 - -
Eupl04g02006 513 Pfam SET domain 55 301 IPR001214 GO:0005515
Eupl04g02006 513 Gene3D set domain protein methyltransferase, domain 1 5 315 - -
Eupl04g02006 513 SUPERFAMILY SET domain 7 317 IPR046341 -
Eupl04g02006 513 FunFam Protein SET DOMAIN GROUP 40 9 315 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl04g02006 SET 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02006 - - psom:113303189 694.886