Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02004 ATGACGAACTACCCCTGTCTGCTTTCTGCACAAACTGGTCGCCAGGAAATAATCCAAGATCTGTATACTGAACGTGTAGATCCTGCACATGGAAAGATCACTGGTGGCATGATCAAGGAGCATCTTCTCTCATTCTACAAAGCCAATAACCGTCGCAAGCCTGAAAGGATCATATTCTACAGGGATGGTGTCAGTGAAGGCCAATTTCGTCAAGTCTTAGAGTATGAACTAAGTGCAATTCAGAAGGCATGGACCTCCCTAGAGGCTAATGATCCTGTACCTCCCATAACATTTGTGGTGGTCCAAAAGCGTCATCACACCAGATATGCGAGGTGCACTCGTGCTGTCTCATATGTGGCACCAGCATATTATGCTCATTTAGCTGCTTTCCGCGCACGTTTTTACTTGGGGAACGATTCATCGTCAGATGGAAGCTCAGTGGCGGATTCTAGTGAAGGAGGGGCTAACAATACTCAGGCCATGGCTGTCCCAGTGAGAGAACTCCCAATTTTATGTGGGAATCTGAAGAAGATCATGTACTACTGTTAA 549 0.4627 MTNYPCLLSAQTGRQEIIQDLYTERVDPAHGKITGGMIKEHLLSFYKANNRRKPERIIFYRDGVSEGQFRQVLEYELSAIQKAWTSLEANDPVPPITFVVVQKRHHTRYARCTRAVSYVAPAYYAHLAAFRARFYLGNDSSSDGSSVADSSEGGANNTQAMAVPVRELPILCGNLKKIMYYC* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02004 182 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 109 136 - -
Eupl04g02004 182 Gene3D - 109 182 IPR036397 GO:0003676
Eupl04g02004 182 SMART Piwi_a_2 1 137 IPR003165 GO:0003676
Eupl04g02004 182 Pfam Piwi domain 8 109 IPR003165 GO:0003676
Eupl04g02004 182 ProSiteProfiles Piwi domain profile. 1 109 IPR003165 GO:0003676
Eupl04g02004 182 SUPERFAMILY Ribonuclease H-like 8 109 IPR012337 -
Eupl04g02004 182 Gene3D - 1 108 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02004 Eupl-Chr4 47523476 47525132 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02004 109 182 Eukaryotic Initiation Factors Gene Family AT5G43810 50.649 2.35e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02004 K11593 - nnu:104606964 152.525