Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02003 ATGAACAAGAGCCAGAGTTCTGGTTCTCAGCACCCATCGGTAATGGCTTCACGGCAACCATCGGTTGGCAGAGGAAGGGGTCGAGGTCGTGGAAGGGGTAGAGGAAGAAGCCCTAATTCTTCCAGTTCTTCTGGCCAACCTTTACCCGATCTGCACCAAGCGACTAATGCTTCCTACCAATTAACACCTAGTACCATACGACCATCTCAGTCTCTTGAGATGATTCCTTCGCAGATTTCACAGCAATTTCGGCAGTTTTCGATCAAAACAGAAGGTACTTCTAGTCAGGAAATTCATCGCTCAAGTGAATCCATGCCATTCCCTCTTCGCCCTGGCAAAGGTAAAATTGGGAGAAAAATCTGGGTAAAGGCGAATCAATTTTTAGTGGAACTCACTTCTCAAGACCTTTATCAGTACAATGTTACTATCACACCTGAAGTTAAGGTAGCGAGGTTGAACCGGGATTTGATGGGCGAGTTGGGTAGACAGTATAAACTTTCTTATCTTGGAAACTTGATATTGGCTTATGATGGTCAGAAAAGTCTCTATACAGCCCGTTCGCTGCCGTTTACTTCAAAAGAGTTTGAAGTTACTCTGCTCAATGAAGCTGGGGTTGCTAGGAATTTTGTAGTTGTGATTAGTTCTGTTACTCGTGTTGATCTGAACCACTTAAGATCGTTTTTAGGGGGGAACCGCGCTGATGTGCCTCAAGAAGCTATACAGGCGCTTGACGTCATTCTGCGTCAGAAGCCCACTTCAGGGTATAAACCCGTGAAACGATCATTTTATTCGCCTGATTTTGGGAGACTGAAAATTGGTGATGGATTGGAAGCTTGGCGAGGCTTTTACCAGAGTGTACGTCCTACGCAGATGGGTCTATCACTAAATATGGATTTGTCGACTGCTGTATTTGTTGAGCCATTGCCAGTCACTAATTTTGTGGCTAGCATATTGAACATTGACAACATATCAGCTACACCATTGTCCGATGCTGAGCGTTTGAAGATCAAGAAGGCTCTTAAAGGTCTGAAAATTGAAGTTATACACCGAGGGGAGATTCACAGGAAGTACTGTATATCTGCTTTAACATCAAAGCCCACTAGAGAAGTAACTTTTACCTACGGCGACAGCGGCACAATTAAATATGTTGTTCATTATTTTAAAGAAACCTATGGTTTGGTTCTTAAACATACCTCGTTGCCTTGTCTGCAAGTGGGGAGTAAGCAGAATCCAACTTATCTACCAATGGAGGTTTGCAAGATTGTTGGTGGCCAGCGTCATTCCAAAAGATTGAGTGAGAAACAAGTTGCTAATCTGGTAAAAGTGAACTGCCAACCTCCTAAAAAGCGGGAGGAAGATATTATGAAGATGCTTCGTCAGAATGATTACAAGGACGATGAATGTGCAAAAGAATTTGGAATCAAAATCAGTAAGGATTTTGCTTCAGTTCCAGCACGTCTTTTGCGTGCACCTCGGCTTAAGTACCATGACTCCGGAAGTGATAAGATTTGGCAGCCACGATTGGGACAGTGGACCATGATGAATAAGAAAATGGTTAACGGGGGAACTGTGAACTACTGGAGATGCATAAATTTTGCGTACAATGTTCCAGATGCCAATGCTCGTGACTTTTGCTTCGAGCTTTCTAACATCTGTTGTGTTTCTGGCATGGCATTTAATCCTGAACCAATACTACCACCTTACCAAGCTCGCCCGGAACAGGTGGACACAGCCTTAAAAGTTCTACATAAGGATGCAATAAGCAGGCTCAAACCGCATGGCAAGGAACTGGATCTGCTGATTGTAATTTTGCCTGAAAACCGAGGTTCTCTTTATGGAGAATTAAAGCGGATATGTGAGACACAACTCGGTCTAGTCTCACAGTGTTGCTTAGCTAAGCATGTATTACAAATGGATAAATGGCAGAGGGAACGGTATATGTCAAATGTTGCTTTAAAGATAAACGTAAAGGTTGGAGGAAGAAACACATTGCTCGAGGATGCGGTACTGGGGCATGTACCTATGGTCAGTGACAAACCAACAATAATTTTTGGTGCTGATGTTACTCATCCCAGTCCAGGGGAGGATCGACCCCCTCTATTGCAGCAGTTGTAG 2115 0.4364 MNKSQSSGSQHPSVMASRQPSVGRGRGRGRGRGRGRSPNSSSSSGQPLPDLHQATNASYQLTPSTIRPSQSLEMIPSQISQQFRQFSIKTEGTSSQEIHRSSESMPFPLRPGKGKIGRKIWVKANQFLVELTSQDLYQYNVTITPEVKVARLNRDLMGELGRQYKLSYLGNLILAYDGQKSLYTARSLPFTSKEFEVTLLNEAGVARNFVVVISSVTRVDLNHLRSFLGGNRADVPQEAIQALDVILRQKPTSGYKPVKRSFYSPDFGRLKIGDGLEAWRGFYQSVRPTQMGLSLNMDLSTAVFVEPLPVTNFVASILNIDNISATPLSDAERLKIKKALKGLKIEVIHRGEIHRKYCISALTSKPTREVTFTYGDSGTIKYVVHYFKETYGLVLKHTSLPCLQVGSKQNPTYLPMEVCKIVGGQRHSKRLSEKQVANLVKVNCQPPKKREEDIMKMLRQNDYKDDECAKEFGIKISKDFASVPARLLRAPRLKYHDSGSDKIWQPRLGQWTMMNKKMVNGGTVNYWRCINFAYNVPDANARDFCFELSNICCVSGMAFNPEPILPPYQARPEQVDTALKVLHKDAISRLKPHGKELDLLIVILPENRGSLYGELKRICETQLGLVSQCCLAKHVLQMDKWQRERYMSNVALKINVKVGGRNTLLEDAVLGHVPMVSDKPTIIFGADVTHPSPGEDRPPLLQQL* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02003 704 CDD PAZ_argonaute_like 307 422 - -
Eupl04g02003 704 SUPERFAMILY Ribonuclease H-like 594 695 IPR012337 -
Eupl04g02003 704 FunFam Protein argonaute-2 300 428 - -
Eupl04g02003 704 ProSiteProfiles Piwi domain profile. 599 704 IPR003165 GO:0003676
Eupl04g02003 704 Pfam Argonaute linker 2 domain 450 495 IPR032472 -
Eupl04g02003 704 MobiDBLite consensus disorder prediction 1 17 - -
Eupl04g02003 704 Pfam N-terminal domain of argonaute 118 247 IPR032474 -
Eupl04g02003 704 SMART PAZ_2_a_3 317 445 IPR003100 GO:0005515
Eupl04g02003 704 SUPERFAMILY PAZ domain 302 463 IPR036085 GO:0005515
Eupl04g02003 704 ProSiteProfiles PAZ domain profile. 308 423 IPR003100 GO:0005515
Eupl04g02003 704 FunFam Argonaute 10 487 666 - -
Eupl04g02003 704 MobiDBLite consensus disorder prediction 1 51 - -
Eupl04g02003 704 Gene3D paz domain 301 427 - -
Eupl04g02003 704 MobiDBLite consensus disorder prediction 35 51 - -
Eupl04g02003 704 Pfam Glycine-rich region of argonaut 20 99 IPR024357 -
Eupl04g02003 704 MobiDBLite consensus disorder prediction 89 109 - -
Eupl04g02003 704 Pfam Piwi domain 600 696 IPR003165 GO:0003676
Eupl04g02003 704 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 100 696 - -
Eupl04g02003 704 Pfam Argonaute linker 1 domain 257 305 IPR014811 -
Eupl04g02003 704 Pfam Mid domain of argonaute 506 584 IPR032473 -
Eupl04g02003 704 SMART DUF1785_2 256 307 IPR014811 -
Eupl04g02003 704 Pfam PAZ domain 334 439 IPR003100 GO:0005515
Eupl04g02003 704 Gene3D - 487 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02003 Eupl-Chr4 47494991 47523455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02003 30 699 Eukaryotic Initiation Factors Gene Family AT1G48410 56.615 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02003 K11593 - nnu:104606963 778.474