Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02002 ATGAACAAGAACAATAGAAACGAAAACTATGGCATTGGCGAGATCTCTGGTTCTCAACGCCCATCGGTTGGTAGAGGAAGGGGTCGTGGTGGTTATGCTGGTGCTGGTGGTCGAGGTAGAGGACAAAGTGGTGGTAATAGTGGTGCTGGTGGTCGAGGTAGAGGAAGCCCTTATTATGCAAATCTTTCCGGCCAATCGGTACCTGATCTGCACCAAGCTACTCAGGCTCCCAACCAACTCAGACCTGTCATCCGACCACCCTCATCTGCAAATTCTGCAGGATCTTCATCTCAAGCAAATGAGATGATTCCTTCGCAGATGGAACGCCAATTTCAGCAGCTTTCGATCCAAACAGAAGGTACTTCTAGCAAGGCTATTCAGCCCTCAAGTGAATCTATGCCATTCCCGCTTCGCCCTGGCAAGGGTCAAAATGGGAAACATCTTAGGGTGAAGGCTAATCATTTTTCAATGGAGCTTACTTCTGAAGGATTTTATCAGTACAATGTTTCTATCACACCTCTAGTTAAGTTTCCGAGGTTGAACTGGGATTTGATCTGGGAGTTGAGTAATCAATATAAACTTTCCCATCTTGGAAACCTGCTACTTTCTTATGATGGTCAGCGCAGTCTTTATACAGCCCGTTCGCTGCCATTTACTTCAAAAGAGTTTGAAGTTACTCTGATCAATGAGGCTGGGGTCGCCAATAAGTACGTAGTTGAGATTAGTTTTGCTGTTTATGTTGATCTGAATCAGTCTAGATCATTTTTAAAAGGGTACCACGCTGATATGCCCCAAGAAGCTATCCAGGCGCTTGACATTGTTCTACGCCAGAAGCCTACTACTTCAGGATTATACCCTGCAAAACAATCATTCTATTCCTCTGATTTCGGGAGAATGACACTTTATGAGGGAGTGGAAGCTTGGCGAGGTTTTTACCAGAGTGTACGTCCTACACAGATGGGTCTGTCACTAAATATGGATTTGTCGTCTGCTGTATTTGTTGAGCCATTGCCGGTCATTGATTTTGTGGTTCAGAAATTGAGAAGGGATATATCGGCTGGACAATTGTCCGATGATGAGTGTCTGAAGATCAAGAAGGCTCTTAAAGGTGTGAAAATTGAAGTTACGCACCGAGGGAACATTCGCCGGAAGTACCGTATAAATGATTTAACATCAGAGATCACTAAAGATTTAACTTTTCCCTTCGGCGAAGACGGCACAACTAAATACATTGTTCAATATTTTCAAGAAACCTATGGCTTGATTCTTAGACATACATTCTTGCCTTGTCTGCAAGTTGGGAATAAGCAGAATCCAAATTATCTGCCGATGGAGGTTTGCAAGATTGTTGGTGGCCAGAGGTATACCAAAAGATTGAGTGACAATCAGGTTGCTACTCTGGTAAAAGTGAACTGCCAACGTCCCAAACAGCGGGAGGAAGATATTATGAAGATGCTTTGTAAGAACGATTACGAGAAAGATGAATACGCAAAAGAATTTGGCATCAAAATCAATAAGCAATTTGCTTCCGTTCAAGCACGTCTTTTGACTGCACCTCGGCTTAAATACCATGACTCTGGAAGTGATAGGATTTGCATGCCACGATTGGGGCAGTGGAACATGATGAACAAGAAAATGGTTAACGGGGGCACTGTGAACAACTGGAGATGCATAAGTTTTGCATACAATGTAACAGTTGCCCATGCTCATGAATTTTGCAGAGAGCTTGCTAGAATGTGTTCCATTTCTGGCATGGCATTTAATCCCGAACCAGTACTACCACCTTACAGAGCTCGCAATAATCAGCCGGACAAAGAATTAAAAGCTCTACACAAGGAAACAATGGCCAAGCTCAACCCACATTCCAAAGAACTGGATCTGCTGATTGTAATTTTGCCTGAAAACAATGGTTCTCTTTATGGAGAATTGAAGCGGATATGTGAGACACAACTTGGTCTAGTCTCACAGTGCTGCTTAGTTAAGCATGTATTTCAGATGAAACCACAGTATATGGCAAACGTTGCTTTAAAAATAAACGTAAAGGTTGGGGGAAGAAACACATTGCTCGAGGATACGTTGCGAGGGCATCTACCTATGGTCAGTGACAAACCAACAATAATTTTTGGTGCTGATGTTACTCACCCCCGTCCGAATGAGGATTGGAGCCCCTCTATTGCAGCGGTTGTGGCTTCACAAGATTGGCCACACGTAACGAAATACGCTTGTCTGCTTTCTGCTCAAACTGCTCGCCAGGAAATAATCCAAGATCTGTTTACAGTACGTGAAGATCCAACTCGAGGAAAGATTACTGGTGGCATGATCAGGGAGCATCTTCTCAATTTTTACAATGCCAATGGCAAGCGCAAGCCTGAAAGGATAATATTCTATAGGGATGGTGTAAGTGAAGGCCAATTTCGTCAAGTCTTAGATTATGAACTAAGAGCAATCCAGAAGGCATGGACCTCCCTTGAAAGTACTAGTACTGTACCTCCCATAACATTTGTGGTGGTCCAAAAGCGTCATCACACAAGGTTGTTTCCAGACAACCATAATGATCTGGGATCAGTAGATAAGAGTGGAAACATACAACCTGGAACTGTGGTGGATTCTCAAATCTGCCATCGTAGCCAGTTTGACTTCTATTTGTGCAGCCATGCAGGCATCCAAGGTACAAGCCGGCCGGCTCATTACCATGTTTTGTGGGATGATAATAAATTCACAGCAGACCAACTCCAGGCTCTCACCAATAACCTTTGCTACATCTATGCAAGGTGCACTCGTGCTGTCTCATATGTGGCACCAGCATATTACGCCCATTTAGCTGCTTCCCGCGCACGTTCTTACTTGGGGTATCATTTATCGTCTGATGGAAATCCAGTGGCGGGCCCCAGTGAAGGTCGGGCTAACACTACTCAGGCAGTAGATGTCCCAGTGAGAGAACTTCCAGACTTATGTGAGAATCTGAAGAATGTCATGTTCTATTGTTGA 2988 0.4394 MNKNNRNENYGIGEISGSQRPSVGRGRGRGGYAGAGGRGRGQSGGNSGAGGRGRGSPYYANLSGQSVPDLHQATQAPNQLRPVIRPPSSANSAGSSSQANEMIPSQMERQFQQLSIQTEGTSSKAIQPSSESMPFPLRPGKGQNGKHLRVKANHFSMELTSEGFYQYNVSITPLVKFPRLNWDLIWELSNQYKLSHLGNLLLSYDGQRSLYTARSLPFTSKEFEVTLINEAGVANKYVVEISFAVYVDLNQSRSFLKGYHADMPQEAIQALDIVLRQKPTTSGLYPAKQSFYSSDFGRMTLYEGVEAWRGFYQSVRPTQMGLSLNMDLSSAVFVEPLPVIDFVVQKLRRDISAGQLSDDECLKIKKALKGVKIEVTHRGNIRRKYRINDLTSEITKDLTFPFGEDGTTKYIVQYFQETYGLILRHTFLPCLQVGNKQNPNYLPMEVCKIVGGQRYTKRLSDNQVATLVKVNCQRPKQREEDIMKMLCKNDYEKDEYAKEFGIKINKQFASVQARLLTAPRLKYHDSGSDRICMPRLGQWNMMNKKMVNGGTVNNWRCISFAYNVTVAHAHEFCRELARMCSISGMAFNPEPVLPPYRARNNQPDKELKALHKETMAKLNPHSKELDLLIVILPENNGSLYGELKRICETQLGLVSQCCLVKHVFQMKPQYMANVALKINVKVGGRNTLLEDTLRGHLPMVSDKPTIIFGADVTHPRPNEDWSPSIAAVVASQDWPHVTKYACLLSAQTARQEIIQDLFTVREDPTRGKITGGMIREHLLNFYNANGKRKPERIIFYRDGVSEGQFRQVLDYELRAIQKAWTSLESTSTVPPITFVVVQKRHHTRLFPDNHNDLGSVDKSGNIQPGTVVDSQICHRSQFDFYLCSHAGIQGTSRPAHYHVLWDDNKFTADQLQALTNNLCYIYARCTRAVSYVAPAYYAHLAASRARSYLGYHLSSDGNPVAGPSEGRANTTQAVDVPVRELPDLCENLKNVMFYC* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02002 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 127 949 - -
Eupl04g02002 995 Gene3D - 515 691 - -
Eupl04g02002 995 SUPERFAMILY PAZ domain 149 489 IPR036085 GO:0005515
Eupl04g02002 995 MobiDBLite consensus disorder prediction 1 64 - -
Eupl04g02002 995 SMART PAZ_2_a_3 341 473 IPR003100 GO:0005515
Eupl04g02002 995 SUPERFAMILY Ribonuclease H-like 621 948 IPR012337 -
Eupl04g02002 995 MobiDBLite consensus disorder prediction 80 100 - -
Eupl04g02002 995 Pfam Mid domain of argonaute 533 612 IPR032473 -
Eupl04g02002 995 Pfam Argonaute linker 1 domain 287 334 IPR014811 -
Eupl04g02002 995 CDD Piwi_ago-like 495 949 IPR045246 -
Eupl04g02002 995 MobiDBLite consensus disorder prediction 116 142 - -
Eupl04g02002 995 Pfam PAZ domain 359 467 IPR003100 GO:0005515
Eupl04g02002 995 Gene3D paz domain 331 455 - -
Eupl04g02002 995 Gene3D - 696 995 IPR036397 GO:0003676
Eupl04g02002 995 Pfam Argonaute linker 2 domain 477 523 IPR032472 -
Eupl04g02002 995 Pfam Piwi domain 628 948 IPR003165 GO:0003676
Eupl04g02002 995 Pfam N-terminal domain of argonaute 148 275 IPR032474 -
Eupl04g02002 995 ProSiteProfiles PAZ domain profile. 337 451 IPR003100 GO:0005515
Eupl04g02002 995 Pfam Glycine-rich region of argonaut 28 128 IPR024357 -
Eupl04g02002 995 MobiDBLite consensus disorder prediction 116 130 - -
Eupl04g02002 995 CDD PAZ_argonaute_like 336 450 - -
Eupl04g02002 995 SMART DUF1785_2 285 336 IPR014811 -
Eupl04g02002 995 SMART Piwi_a_2 627 950 IPR003165 GO:0003676
Eupl04g02002 995 FunFam protein argonaute 10-like 696 995 - -
Eupl04g02002 995 MobiDBLite consensus disorder prediction 1 16 - -
Eupl04g02002 995 ProSiteProfiles Piwi domain profile. 627 950 IPR003165 GO:0003676
Eupl04g02002 995 FunFam Argonaute 10 515 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02002 Eupl-Chr4 47459180 47469348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02002 51 995 Eukaryotic Initiation Factors Gene Family AT1G48410 58.733 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02002 K11593 - ming:122078405 1154.81