Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02001 ATGGTTAATGGAGGAACAGTAAACCACTGGATATGCATAAACTTTTCATGCAATCTGCAAGATAGTGTCGCCAACGGGTTTTGTCACGAGCTTGCCCAAATGTGTAACAATTCTGGCATGGTATTTAATCCCGAGGCAGTACTTCCACCGTACAGCGCTCGTCCTGATCAGGTTGAGGGAGCCTTAAAGGCTAGGTACCATGATACCATGGCCATACTCCAGCCCCAGGGCAAGAAACTGGACCTGCTGATTGCTATTTTGCCAGATAATAATGGTTCACTCTATGATGATTTGAAGCGGATATGTGAAACTGATCTTGGACTTGTGTCCCACTGTTGCTTAACCAAAAACGTTTATAGGATGGATAAAGAGTATCTGGTAAATGTAGCTCTAAAGATAAGTTTCAAGGTTGGCAGAAGGAACACAGTGCATGTAAACCATCCTCAACCTGGGGAGGAGGATTCAAGCCCTTCTATTGCAGCTAGAATGGTTAATGGAGGAGCAGTGAACCACTGGATATGCATAAACTTTTCACACACTGTGCAAGATAGTGTTGCCCATGGATTTTGTCAGGAACTTGCCCAAACGTGCCGCATTTCTGGGATGGAATTTAATCCTGAGGCAGTACTTCCACCGTACAGCGCTCATCCTGATCAGGTTGAACAAGCTGTAAAGGTTCTGTACCATGATGCCATGGCCATACTCCAGCCCCAGGGCAAGAAACTCGACCTTCTGATTGTTATTTTGCCGGGTGATAATGGTTCTCTATGGGGTGGTTTGAAGCGGATATGCAGGGCTGACCTTGGCCTTGTGTCCCAGTGTTGCTTAACCAAACACGTTTTTAGTACGACCAAAGTGTATCTGGCAAATGTAGCTTTTAAGATAAATTTGAAGGTTGGGGGAAGTAACGCAGTGCTCGTTGATGCATTGTCGAGGCGCATACCTCTGGTCAGCGACCAACCAAGCGGTTGGGAGGATGCAAGCCCTTCTATTGTACCTGAAATGATTAATGGAGGAATGACGATCCAATGGACATGCATTAACTTTTCACGCAACGTACAATATATTGCTGCCCGTGGTTTTTGTTACAAGCTTGCCCAAGTGTGCCATATATCTGGCATGGCATTAAATCTTGACCCAGTACTTCCACCATACAACGGTCGTCCTGATCAGGTTGAGACTGCCCTTAAGGCTCGGTACCATGACGCCATGACCATACTCCAGCCCCAGGGAAAGAAACTCGACCTGCTGATTGCTATATTGCCGGATAATAATGGTTCTCTCTATGGTGATTTGAAGCGAATATGTGAGATTGATCTTGGACTTGTTTCCCAGTGTTGCTTAGCCAAACATGTTCATATGATGAGTAATCAGTATCTGGAAAATGTAGCTCGTAAGATAAATGCAAAGGTTGGTGGGAGGAACACACTTGTTGATGCATTGTCGAGGCGTGTACCTCTGGTCAGTGACATCTTTGGTGCTGATGCAACACATCCTCATCCTAGCTGTGTGTTTTAA 1518 0.4545 MVNGGTVNHWICINFSCNLQDSVANGFCHELAQMCNNSGMVFNPEAVLPPYSARPDQVEGALKARYHDTMAILQPQGKKLDLLIAILPDNNGSLYDDLKRICETDLGLVSHCCLTKNVYRMDKEYLVNVALKISFKVGRRNTVHVNHPQPGEEDSSPSIAARMVNGGAVNHWICINFSHTVQDSVAHGFCQELAQTCRISGMEFNPEAVLPPYSAHPDQVEQAVKVLYHDAMAILQPQGKKLDLLIVILPGDNGSLWGGLKRICRADLGLVSQCCLTKHVFSTTKVYLANVAFKINLKVGGSNAVLVDALSRRIPLVSDQPSGWEDASPSIVPEMINGGMTIQWTCINFSRNVQYIAARGFCYKLAQVCHISGMALNLDPVLPPYNGRPDQVETALKARYHDAMTILQPQGKKLDLLIAILPDNNGSLYGDLKRICEIDLGLVSQCCLAKHVHMMSNQYLENVARKINAKVGGRNTLVDALSRRVPLVSDIFGADATHPHPSCVF* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02001 505 SUPERFAMILY Ribonuclease H-like 411 501 IPR012337 -
Eupl04g02001 505 SUPERFAMILY Ribonuclease H-like 77 167 IPR012337 -
Eupl04g02001 505 ProSiteProfiles Piwi domain profile. 244 317 IPR003165 GO:0003676
Eupl04g02001 505 FunFam Argonaute 10 148 307 - -
Eupl04g02001 505 FunFam Argonaute 10 331 479 - -
Eupl04g02001 505 Gene3D - 1 143 - -
Eupl04g02001 505 ProSiteProfiles Piwi domain profile. 82 171 IPR003165 GO:0003676
Eupl04g02001 505 SUPERFAMILY Ribonuclease H-like 167 307 IPR012337 -
Eupl04g02001 505 Gene3D - 333 481 - -
Eupl04g02001 505 Gene3D - 160 310 - -
Eupl04g02001 505 ProSiteProfiles Piwi domain profile. 416 505 IPR003165 GO:0003676
Eupl04g02001 505 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 334 502 - -
Eupl04g02001 505 Pfam Piwi domain 83 148 IPR003165 GO:0003676
Eupl04g02001 505 Pfam Piwi domain 417 500 IPR003165 GO:0003676
Eupl04g02001 505 Pfam Piwi domain 245 314 IPR003165 GO:0003676
Eupl04g02001 505 FunFam Argonaute 10 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02001 Eupl-Chr4 47437218 47440742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02001 334 501 Eukaryotic Initiation Factors Gene Family AT1G48410 69.942 4.00e-72 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02001 K11593 - csav:115714148 269.24