Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g02000 ATGGTGAGGAAGAGGAGAACGGACATTCCTGGTGGCGGTGAGAGCTCAGAATCTCAAGAAGCCAGTGGTAGTGGTGGCCGTGGTGGTGCCCAGCGACCACCTGATAGGGCTGCACCACCAGCTCAACAGGGAGTTGGAGGAGGAAGGGGGTGGGCCCCCCAATCTCAGCAAGGAGGCCGAGGAGGATATGGTGGAGGGGGATATCCTCAGGGACGTGGTGGATCTCAGCCACGTGGTGGGATGGCACCTCAGCAATATGGTGGTCCTCCGGCTGAATATCAAGTTCGGAGTACTCAGTCACGAGGAATGCCACCTCAGCAACCCGGTGGTACTGCTCTGGAATCCGGTGGGAGGCGCCGAGGTGGTGGCAGTATGGCTGGTGGTCGTGGTGGGGGCCCTACTTCTGGTGGCCCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCCAGGCTCCTCATCAAGCCACAGTGACTCCGGCGGAATCTTCCTCTCAGGCCAGTTCTTCTCGGTCACCCGAACCAAGCCCTGCAGAATTGACGCAGCAGTATCAGCAGCTTTCCATCCAGACAGAGGAGACTTCCATCCAGGCAGTTCAACCTGTTGCTCCGTCGAGTAAATCTATGAGATTTCCTCTTCGCCCTGGCAAGGGGAGCTGTGGGATGAAGTGCGTGGTCAAGGCAAACCATTTCTTTGCTGAGCTACCGGATAAAGACCTTCACCAGTATGATGTTTCGATTACGCCTGAAGTAACTTCACGGGGCGTGAACCGGGCTGTTATGGAGCAGCTGGTGAAATTGTACAGACATTCACACCTTGGAAGGAGGCTTCCTGCTTATGATGGCCGAAAGAGTCTTTATACTGCTGGACCATTACCGTTTACTTCAAAAGAGTTCTCAATTACTCTGGTTGACGAGGATGATGGCACGGGTGGTACCAGGAGAGAGAGGCAATTCAGAGTTGTCATCAAATTGGCTGCCCGTGCGGATTTACATCATTTAGGATTGTTTTTACAGGGGAGGCAGGCAGATGCACCTCAAGAAGCCCTGCAGGTTCTTGACATTGTTTTGCGCGAACTGCCTACTACTAGGTATTCGCCTGTGGGCCGGTCATTTTATTCCCCTGATTTAGGGAGAAGGCAACCACTTGGTGAGGGGTTGGAAAGTTGGCGTGGTTTTTATCAGAGTATTCGTCCAACTCAGATGGGTCTATCTCTGAATATTGATATGTCATCCACTGCTTTTATCGAGCCATTGCCTGTTATTGACTTTGTAACTCAGCTCTTGAACCGGGATGTCTTAGCTAGACCATTATCTGATGCTGATCGCATCAAGATTAAGAAGGCTCTTAGAGGTGTGAAGGTTGAAGTTACACACCGGGGAAATATGCGCAGAAAATACCGTATATCTGGTTTAACATCGCAGGCAACACGAGAATTAACTTTCCCAGTCGACGACAGAGGTACGATGAAATCTGTTGTCCAATATTTCCAAGAGACCTATGGTTTTGTTATTCAGCATACCCAGTGGCCTTGTCTGCAAGTGGGGAATCAGCAGAGGCCAAATTATCTGCCTATGGAGGTGTGCAAAATTGTGGAAGGCCAGAGGTACTCCAAGAGGTTGAATGAGAGACAGATTACTGCGCTGCTGAAGGTGACCTGTCAACGTCCTCATGATCGAGAGCTTGATATTATGCAGACGGTTCATCACAATGCTTACCATGAAGACCCCTACGCAAGGGAATTTGGCATCAAAATCAGTGAGAAACTTGCTTCAGTTGAAGCACGCATTCTGCCTGCACCTTGGCTTAAATACCATGATACAGGAAGAGAAAAGGATTGCTTGCCGCAGGTCGGTCAATGGAATATGATGAATAAGAAAATGGTTAATGGAGGAACAGTGAACCACTGGATATGCATTAACTTTTCACGCAATGTGCAAGAAAGTGTTGCACGTGGGTTTTGTCACGAGCTTGCCCAGATGTGCCACATTTCAGGCATGGCATTTAATCCCGAGCCAATACTTCCACCTTACAGTGCTCGACCAGATCAAGTTGAGAGAGCCTTAAAGGCTAGGTACCATGACGCCATGAGTGCAATCCAGCCCCAGGGCAAGGAACTTGACCTGCTGATTGTTATTTTGCCGGATAATAATGGTTCTCTCTATGGTGATTTGAAGCGGATATGTGAGACTGACCTTGGACTGGTGTCCCAGTGTTGCTTAACCAAACATGTTTTTAGGATGAGTAAACAGTATCTAGCAAATGTAGCTCTTAAAATAAATGTGAAGGTTGGCGGAAGGAACACAGTGCTTGTTGATGCTTTGTCGAGGCGCATACCTCTGGTCAGTGACAGACCAACAATCATCTTTGGTGCTGATGTAACACATCCTCATCCTGGGGAGGATTCGAGCCCCTCTATTGCAGCTGTTGTGGCTTCTCAAGATTGGCCGGAGGTCACAAAGTATGCTGGTTTGGTCTGTGCTCAAGCCCATCGCCAGGAGCTGATCCAAGATCTTTTTAAAGTCTGGCAAGATCCTGTAAGAGGAACTGTGACTGGAGGCATGATCAAGGAGCTTCTGATATCTTTCCGGAGAGCAACTGGGCAAAAACCTCAACGGATCATATTCTACAGGGATGGTGTAAGCGAAGGCCAATTTTATCAAGTCTTATTGTATGAACTTGACGCAATTCGTAAGGCATGTGCGTCTCTGGAACCGAATTATCAGCCCCCTGTAACATTTGTTGTGGTTCAAAAGCGTCATCACACAAGGTTGTTTGCCAACAATCATGCTGATCGCCATGCAGTTGATAGGAGCGGAAACATTTTACCTGGAACCGTTGTAGACTCCAAGATCTGCCATCCAACTGAGTTTGACTTCTATCTGTGCAGCCATGCTGGCATTCAGGGTACAAGCCGGCCCGCTCATTACCATGTTCTATGGGATGAGAACAAGTTCACAGCTGACGGTCTCCAGTCTCTTACTAATAATCTCTGCTACACCTATGCAAGGTGCACCCGTTCCGTCTCCATTGTACCGCCGGCATATTATGCACATCTGGCTGCATTCCGAGCGCGTTTTTACATGGAGCCGGAGACTTCTGATAGTGGGTCAATGACAAGCGGTGCGGTGGGTCGTGGTGCAGGAATGGGGAGTGGTCCCCGTAGCACAAGGATTCCAGCTGCAAATGCTGCAGTGAGGCCCCTCCCTGCCCTCAAGGAGAATGTGAAAAGGGTTATGTTCTATTGCTAG 3252 0.4948 MVRKRRTDIPGGGESSESQEASGSGGRGGAQRPPDRAAPPAQQGVGGGRGWAPQSQQGGRGGYGGGGYPQGRGGSQPRGGMAPQQYGGPPAEYQVRSTQSRGMPPQQPGGTALESGGRRRGGGSMAGGRGGGPTSGGPSRPPVPELHQATQAPHQATVTPAESSSQASSSRSPEPSPAELTQQYQQLSIQTEETSIQAVQPVAPSSKSMRFPLRPGKGSCGMKCVVKANHFFAELPDKDLHQYDVSITPEVTSRGVNRAVMEQLVKLYRHSHLGRRLPAYDGRKSLYTAGPLPFTSKEFSITLVDEDDGTGGTRRERQFRVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYSPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVLARPLSDADRIKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDDRGTMKSVVQYFQETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHDRELDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRNVQESVARGFCHELAQMCHISGMAFNPEPILPPYSARPDQVERALKARYHDAMSAIQPQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFRMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKVWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHADRHAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVGRGAGMGSGPRSTRIPAANAAVRPLPALKENVKRVMFYC* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g02000 1083 MobiDBLite consensus disorder prediction 91 106 - -
Eupl04g02000 1083 Pfam Piwi domain 710 1029 IPR003165 GO:0003676
Eupl04g02000 1083 Pfam Mid domain of argonaute 616 690 IPR032473 -
Eupl04g02000 1083 FunFam Argonaute 10 597 772 - -
Eupl04g02000 1083 SUPERFAMILY Ribonuclease H-like 704 1030 IPR012337 -
Eupl04g02000 1083 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 199 1031 - -
Eupl04g02000 1083 FunFam Protein argonaute-2 412 538 - -
Eupl04g02000 1083 Gene3D - 597 772 - -
Eupl04g02000 1083 Pfam Argonaute linker 1 domain 367 417 IPR014811 -
Eupl04g02000 1083 MobiDBLite consensus disorder prediction 1034 1053 - -
Eupl04g02000 1083 SMART PAZ_2_a_3 423 555 IPR003100 GO:0005515
Eupl04g02000 1083 MobiDBLite consensus disorder prediction 1 185 - -
Eupl04g02000 1083 Pfam PAZ domain 442 548 IPR003100 GO:0005515
Eupl04g02000 1083 Gene3D - 778 1083 IPR036397 GO:0003676
Eupl04g02000 1083 CDD PAZ_argonaute_like 418 532 - -
Eupl04g02000 1083 SUPERFAMILY PAZ domain 225 570 IPR036085 GO:0005515
Eupl04g02000 1083 FunFam protein argonaute 10-like 778 1083 - -
Eupl04g02000 1083 Pfam N-terminal domain of argonaute 223 357 IPR032474 -
Eupl04g02000 1083 SMART Piwi_a_2 709 1030 IPR003165 GO:0003676
Eupl04g02000 1083 CDD Piwi_ago-like 577 1029 IPR045246 -
Eupl04g02000 1083 ProSiteProfiles PAZ domain profile. 419 533 IPR003100 GO:0005515
Eupl04g02000 1083 ProSiteProfiles Piwi domain profile. 709 1030 IPR003165 GO:0003676
Eupl04g02000 1083 MobiDBLite consensus disorder prediction 150 185 - -
Eupl04g02000 1083 Pfam Argonaute linker 2 domain 559 605 IPR032472 -
Eupl04g02000 1083 SMART DUF1785_2 366 418 IPR014811 -
Eupl04g02000 1083 Gene3D paz domain 412 537 - -
Eupl04g02000 1083 Pfam Glycine-rich region of argonaut 88 202 IPR024357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g02000 Eupl-Chr4 47420176 47431622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g02000 140 1083 Eukaryotic Initiation Factors Gene Family AT1G48410 82.241 0.0 1622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g02000 K11593 - nnu:104606963 1846.25