Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01992 ATGGGTGAAGAATCCTTGACAACAACGACAACAACAGTAACAACAACTCCTTTAGATAGAGGAGTTGAACAGGCAATTGTTGCCTTGAAGAAGGGTGCGCAAGTTTTGAAGTATGGACGGAGAGGGAAGCCCAAAGTATGCCCCTTTTGGCTATCCACGGATGAGAAGATTTTAATATGGTATTCTGGAAAGGAGGAAAAACAATTGATGTTGGACTCGATCACAAAGATTATTCCTGGACAACGGACTGTAACTTTTCAGAGGCAGCCTCTACCAGAAAAGGAGTCTCAGTCCTTTTCGCTCATCTATGCGAATGGAGAACGCTCACTTGATTTGATATGCAAGGACAAGGAGCAGGCAGAATCTTGGTTTGTAGGCTTGAGAGCTTTGGTATTCAGGTCCCACCACCCTAGACCTGTGGGTACACTGAGAAGTCGCAGAGGTGCACAAACCTGTGCCAACAGCCCGGTTGGTTATAGCCGCAGAAAGCATAATCTAGGACTTCAGGAGGATCCCACGAAACGTTTACAGGTGCGCAGCTTTTGTGGGAGTCCTCCTGGGTCACTTGCGGAGAGGTGTCTTTCAGATGGCGTGTCATATTCTTCTGATAGCTTTTATTCATCAGAGCCAAGAACTTTCTCAAACATGCAAACTGTAATGGATATTGTAATTCCAGATTTTCCCTATTTGGAACCAGATGATCCCAAGGAGAAGAAGAGAGGAGCTCATGCTAGCACAGAATATCGAACGAATTTGCTTAGTGGAGTCAGTTCCCCCGCTCATGGGTTTCCACTAGTGGACAAGAATGATGTTCTGAGGGATGTGTTGATGTGGGGAGAAGGGATAGAAGGGGGAAACTTAGGGGGTGGGGTTGATGGGTTTGGTACTCCTAATGGTACACTATTTGATGCTTTATTGCCCAAATTACTTGAATCAACTGCATTGTTAGATGTAAAGAACATTTCCTTTGGAGGAAAGCACGCCGCTTTAGTTACCAGACAGGGAGAAGTCTTTTGTTGGGGTGAGGGGAATGGAGGAAAACTTGGTCATAAAATTAATATGGATGCGTCTTACCCCAAAATTGTCGAATCCCTGAATGGGGTCCATGTAGAATCAGTTGCCTGTGGTGAATATCACACATGTGCTCTGATGCGCTCTGGTGAACTTTATACATGGGGTGACAGTGGTCTTGGTGTTGACCTTGTAGGTGATGGAGGCAAAAGGAGTCATTGGCTTCCATGTAAACTTTCTGGTCCTTTGGACGGTGTATATGTGTCAAGTGTTGCATGTGGAGGATGGCATACGGCGCTTGTGTCCTCCTCAGGGCAGTTATTTACGTATGGGGATGGAACATTTGGAGTCCTTGGGCATGGTAATCTTCAAAGTGTTTCTCAACCGAAAGAAGTTGAATCTCTGAAAGGTTTAAGGGTAAAGTCTGTTGCATGTGGACCGTGGCACACAGCCGCTATTGTGGAAGTAATTACTGACCATTTCAAGGCCAATGCTTCTGGTGGGAAATTGTTTACATGGGGAGATGGGGATAAAGGAAGGCTCGGACATGTGGATCAAGAAAGGAAACTTTTTCCAACATGTGTTGCTCGCCTCGTGGATCATGATTTTGTTCAGGTGTCTTGTGGAAGAATGCTGACTGTCGGACTCACGAATACAGGTATAGTATATACCATGGGAAGTGCGGTGCATGGGCAACTAGGGAATCCACAGGCTGAAGATAAATCAATAGCAATTGTTGAAGGGAAACTTAAAGGAGAGTTTGTTAAGGATATTTCATCAGGCTCATATCATATAGCTGTCTTGACATCAAGGGGTAGAGTCTATACGTGGGGAAAGGGTGCGAATGGACGGTTAGGGTTAGGAGATATTGAAGATAGAAATTGTCCAACTTTAGTGGAGGCATTGAGAGATAGGCAGGTAGAAAGTGTCGCTTGTGGATCTAGTTTCACGGCTGCAATTTGTTTACACAAATCTATCTTTTGTAGTGATCAATCAGCTTGTAGTGGATGCAGAATGGTTTTTGGGTTTACTAGGAAGAAGCACAACTGTTATAATTGTGGATTTTTGTTCTGCCGTGCATGTAGTAGTAAGAAGGTTATAAATGCGTCATTGGCACCAAATAAAAGCAAGTCACATCATGTCTGTGATTCATGCTTCAATAAATTGGCAAAGTTTACAAATTCAAAGAGGCTAATACAGCATGAAAATCCAAGTCCAAGACAGTCCTTGATAACACGTAAGGCATACACTGACTTGAAAATAGACAGGGGAGAAGCAACACTTACACGGGGTCTATTATTTTCACCCAAACTGTCTAGTCGTGAGGAAACCAAGTTCATTGAAGGGCAGACCTTGGGCAAGCAAGGGAAAAACCATCAGCTTATGGATCCTGTTTCACCTTTGTCAAGTGGACCACCAAGATGGGGCCAGGTCCCGTGCCCTACGTTATTTAGCACATCTTGCAGAGAAAATTCTACAATGTTTGTTCCTCTGTCCAAAAATGAGTTACCTGCTGTTTCTCCTGTGTATGCACAGCAGAACCCCCCTGGATCAAAATCTATTATTCCTCTTTCCATGAGTGTGGGTAAAGGCTTATCAGAATCAGATAAGATGCTTATTGAAGAAGTTAAGAGGTTGCGAACTGAGGCTAAGAACCTTGAAAAAAAATTTCAAATGAAAAGTGAGGAGCTCCAACAATATCAACAAAAAATTGAGGAAGCATGGTCGCTAGCAAGGGAGGAAGCTGCTAAGTGTAAAGCAGCGACGGAAATAATAAAAGCTTTGACATCAAGGCTGTATGCGATGTCTGAGAAACGTTCTGCTGGAAGAGAAGCAAATGGCATTTCCGTGTTAGCCGAGGGAATTGATGTGCATCTACCTCAAATCACACCAATCTTTACAGATACCCGAGCTTTAGAGGATGTGGGACCAATGCTTGTTACCACTCAATTGTCTTCTGAAGTTACGGTCCTTAAAGATAGGCAAGTAAATGGTTTATGCAGCTCACCTATCCCATTCCGTGATACAATACCAAGTACGTATGAGAGAGACCACTGTAACAGAGATGCTGCTTCGGCAGATGATTCACTCGTTGGAAAGACAGATTCCAGACAAAATGTTACCAAAACATTAAAATCGGAATGGGTAGAGCAAGATGAACCTGGTGTATATATCACATTCGAGACTTTACCAAGTGGACAGAAGGGCCTCAAGCGCGTAAGATTTAGTCGGAAGCGATTCAGTGAGAAGGAAGCTGAGCAATGGTGGGAAGAGAATCAGCTAAGAGTATACCAGAAGTATGACATCGAAGGAGTAGTAAGCCCAAGTACAAACAAGATGAACAGCTAA 3360 0.4372 MGEESLTTTTTTVTTTPLDRGVEQAIVALKKGAQVLKYGRRGKPKVCPFWLSTDEKILIWYSGKEEKQLMLDSITKIIPGQRTVTFQRQPLPEKESQSFSLIYANGERSLDLICKDKEQAESWFVGLRALVFRSHHPRPVGTLRSRRGAQTCANSPVGYSRRKHNLGLQEDPTKRLQVRSFCGSPPGSLAERCLSDGVSYSSDSFYSSEPRTFSNMQTVMDIVIPDFPYLEPDDPKEKKRGAHASTEYRTNLLSGVSSPAHGFPLVDKNDVLRDVLMWGEGIEGGNLGGGVDGFGTPNGTLFDALLPKLLESTALLDVKNISFGGKHAALVTRQGEVFCWGEGNGGKLGHKINMDASYPKIVESLNGVHVESVACGEYHTCALMRSGELYTWGDSGLGVDLVGDGGKRSHWLPCKLSGPLDGVYVSSVACGGWHTALVSSSGQLFTYGDGTFGVLGHGNLQSVSQPKEVESLKGLRVKSVACGPWHTAAIVEVITDHFKANASGGKLFTWGDGDKGRLGHVDQERKLFPTCVARLVDHDFVQVSCGRMLTVGLTNTGIVYTMGSAVHGQLGNPQAEDKSIAIVEGKLKGEFVKDISSGSYHIAVLTSRGRVYTWGKGANGRLGLGDIEDRNCPTLVEALRDRQVESVACGSSFTAAICLHKSIFCSDQSACSGCRMVFGFTRKKHNCYNCGFLFCRACSSKKVINASLAPNKSKSHHVCDSCFNKLAKFTNSKRLIQHENPSPRQSLITRKAYTDLKIDRGEATLTRGLLFSPKLSSREETKFIEGQTLGKQGKNHQLMDPVSPLSSGPPRWGQVPCPTLFSTSCRENSTMFVPLSKNELPAVSPVYAQQNPPGSKSIIPLSMSVGKGLSESDKMLIEEVKRLRTEAKNLEKKFQMKSEELQQYQQKIEEAWSLAREEAAKCKAATEIIKALTSRLYAMSEKRSAGREANGISVLAEGIDVHLPQITPIFTDTRALEDVGPMLVTTQLSSEVTVLKDRQVNGLCSSPIPFRDTIPSTYERDHCNRDAASADDSLVGKTDSRQNVTKTLKSEWVEQDEPGVYITFETLPSGQKGLKRVRFSRKRFSEKEAEQWWEENQLRVYQKYDIEGVVSPSTNKMNS* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01992 1119 SUPERFAMILY PH domain-like 22 131 - -
Eupl04g01992 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 387 441 IPR000408 -
Eupl04g01992 1119 Pfam Transcription factor BRX N-terminal domain 917 942 IPR027988 -
Eupl04g01992 1119 ProSiteProfiles BRX domain profile. 1050 1105 IPR013591 -
Eupl04g01992 1119 SUPERFAMILY RCC1/BLIP-II 274 661 IPR009091 -
Eupl04g01992 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 442 493 IPR000408 -
Eupl04g01992 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 480 490 IPR000408 -
Eupl04g01992 1119 Pfam FYVE zinc finger 667 727 IPR000306 GO:0046872
Eupl04g01992 1119 PRINTS Chromosome condensation regulator RCC1 signature 387 403 IPR000408 -
Eupl04g01992 1119 PRINTS Chromosome condensation regulator RCC1 signature 318 331 IPR000408 -
Eupl04g01992 1119 PRINTS Chromosome condensation regulator RCC1 signature 428 444 IPR000408 -
Eupl04g01992 1119 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Eupl04g01992 1119 PRINTS Chromosome condensation regulator RCC1 signature 546 564 IPR000408 -
Eupl04g01992 1119 PRINTS Chromosome condensation regulator RCC1 signature 604 625 IPR000408 -
Eupl04g01992 1119 PRINTS Chromosome condensation regulator RCC1 signature 444 458 IPR000408 -
Eupl04g01992 1119 FunFam PH, RCC1 and FYVE domains-containing protein 1 243 495 - -
Eupl04g01992 1119 CDD FYVE_like_SF 670 723 - -
Eupl04g01992 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 595 605 IPR000408 -
Eupl04g01992 1119 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 65 935 - -
Eupl04g01992 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 273 334 IPR000408 -
Eupl04g01992 1119 Coils Coil 873 907 - -
Eupl04g01992 1119 Pfam Transcription factor regulating root and shoot growth via Pin3 1049 1104 IPR013591 -
Eupl04g01992 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 609 660 IPR000408 -
Eupl04g01992 1119 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 665 727 IPR017455 -
Eupl04g01992 1119 SUPERFAMILY FYVE/PHD zinc finger 666 737 IPR011011 -
Eupl04g01992 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Eupl04g01992 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Eupl04g01992 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 386 IPR000408 -
Eupl04g01992 1119 CDD PH_PLC_plant-like 20 132 - -
Eupl04g01992 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 733 IPR013083 -
Eupl04g01992 1119 SMART fyve_4 660 728 IPR000306 GO:0046872
Eupl04g01992 1119 Pfam Pleckstrin homology domain 23 131 IPR001849 -
Eupl04g01992 1119 Gene3D - 495 673 IPR009091 -
Eupl04g01992 1119 Gene3D - 247 399 IPR009091 -
Eupl04g01992 1119 Gene3D - 400 494 IPR009091 -
Eupl04g01992 1119 Gene3D - 21 137 IPR011993 -
Eupl04g01992 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Eupl04g01992 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 386 437 IPR000408 -
Eupl04g01992 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 335 383 IPR000408 -
Eupl04g01992 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 505 551 IPR000408 -
Eupl04g01992 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 609 657 IPR000408 -
Eupl04g01992 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 441 490 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01992 Eupl-Chr4 47150615 47168918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01992 1051 1107 Major Intrinsic Protein MIP AT1G31880 47.368 3.73e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01992 - - nnu:104589558 1511.12