Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01984 ATGGCAGCAGTTGTGCTTACAGTTGCTCCTCCTATCTCTTCATCTCTCAGAAAAATTGGAAGACAGAGAGAAAGCTCTTCTTCTACTTTAAATCTCCTCTCTTCATCTTCTTCTTCATCTTTGTCTCATGTGCAATTCCCTTCTCTATCCCTCTCTGCAACTCATTTGAGATACCGCCATGGCTGCGTTGTGGTGGCGTGCCTTCCTTCTTCGCCCAAGAGTAGTAACACAGCCTCCACCAAGCTCTACGTCAGTGGACTTTCATTCCGCACCACCGAAGAGAGCTTGAGAAATGCTTTCCAAAACTTTGGCCAACTTGTAGAAGTGAACCTCGTGATGGACAGAATTGCGAATAGGCCAAGAGGCTTTGCTTTCCTTCGTTATGCGACAGAGGAGGAATCCAAGAATGCCATTGAAGGGATGCATGGAAAGGTGCACACCACTTGTGTTGCTCAGTTTCTGGATGGCAGGGTCATATTTGTGGAGGTTGCCAAACCGAGGTCGGAGCTGCGCCAAGGCCTTAGGGAAACCCCAAGACAGTATTGA 546 0.4799 MAAVVLTVAPPISSSLRKIGRQRESSSSTLNLLSSSSSSSLSHVQFPSLSLSATHLRYRHGCVVVACLPSSPKSSNTASTKLYVSGLSFRTTEESLRNAFQNFGQLVEVNLVMDRIANRPRGFAFLRYATEEESKNAIEGMHGKVHTTCVAQFLDGRVIFVEVAKPRSELRQGLRETPRQY* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01984 181 SMART rrm1_1 81 162 IPR000504 GO:0003723
Eupl04g01984 181 SUPERFAMILY RNA-binding domain, RBD 72 175 IPR035979 GO:0003676
Eupl04g01984 181 PANTHER NUCLEOLAR PROTEIN 8 66 176 - -
Eupl04g01984 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 166 IPR000504 GO:0003723
Eupl04g01984 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 145 IPR000504 GO:0003723
Eupl04g01984 181 Gene3D - 69 181 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01984 Eupl-Chr4 46955470 46965175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01984 63 139 C2H2 Transcription Factor Family AT2G19380 28.571 1.15e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01984 - - nnu:104612367 207.994