LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl04g01983	ATGACAGTCCAGGATGAGAGTGGTGGAACAAGTTCGAATTCGGCTCTCGCTGGTGGCAATCGGATTTGTTTGGATGTAACTGCAGGTCAACTAAAGGATATTTATTCGTCGGGAGATGAACATACACCCAAGGTGAGAAAGCCTTATACAATTACAAAACAGCGAGAGAGATGGACGGAGGAAGAGCATAAGAAGTTCCTTGAAGCTTTAAAGCTGTATGGTCGAGCTTGGCGTCGGATAGAAGAACACGTGGGTACCAAAACCGCAGTTCAGATTCGAAGCCATGCTCAGAAATTCTTCTCTAAGGTGGTCAGGGAATCTAGCAGCAATGCGGGATCTGGGAAGCCAATTGAGATACCTCCTCCTCGGCCGAAAAGGAAACCCATGCACCCTTATCCCCGAAAATTGATTCATTCTATTAAAAAAGGAATCTTGATTCCGGAGCAACAGGAAAGGTCCCCGTCACCAAATTTATCAATCTCGGAACAAGAGAATCGATCGCCAACATCAGTGTTTTCTGCAATTGGATCAGATACAATGGAATCCACAATTTCGAATCCACAGAATGGTAGTCCATCGCCAGTTTCATCTGCTGCCGGTGTGATCCCTGTCAGTTCATTACCTAGTGAGCAGGAGAATGGATGTCCGTCAAATACTTCCTTAGCCAGAGAAGAAAATGGATCCCAGTCATCGGTCCTAGCAACTGCCAGTTCAACCCCACATGACCAATCTGTCATGAAACTTGATTTGGGTTACAAAAGTAATGTAGATAAAGAGGAAAATTCGACCATGGAAGCACCAACTAGGAGTCTTAAGCTGTTTGGAAGGACAGTTTTGGTCACCGATTCCCACAGACCATCATCTTCATCCGTTGGGATACGCAAGTCATCGGTCCCCGAAAGCCATCAACAAAACTTCGACGCAAATGAGGGAAAGCCTGTGCGAACATCACCATGTAACCCAATTCAGAGTGACTTTGCTCTGGACACTAAGAAGTCTGCTTGGAGTCCTTGGCCTTGTGGAGGCCCCGCAATGTTCTACTACATGCAATCCCAGAAAGAAGACCCGAATCTGGTAGAACCTGCTTCTGCAGCTCCTCTGCCTTTGTGGACTTTATATGGAGGTCTACCATTCCCTTTACTTCCGTCCTTAAACCCGACCTCAATTGAAATGTTTCCTAATTCTTGTCTTGAAGAAGACTCAGAAGAGAAGGAAAATCAAAACAAGGAAGGATCTTGGACTGGTTCGAACACTGGTTCTGTGAGCGAGGTGGGGATGGGAGACAAGAATGGAGATGTCGTCGATTCCCAAAGTCAAAATGACAAGGAGAGGGAACAAGGGCTGTTTTCCCAGTTGAAACTGAGTGAGATGTCGGCCTATTCCGATCGACGTGCCAGCCCAGAGAAGTGCATGAAGGGGTTCGTGCCGTATAAAAGATGTTTAGCAGAGAGAGATGCCCAGTCAATGGGAATTAGAGGGGAAGAAAGAGAGGGGCAAAGAATCCGGTTATGCTTATAG	1518	0.4638	MTVQDESGGTSSNSALAGGNRICLDVTAGQLKDIYSSGDEHTPKVRKPYTITKQRERWTEEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVVRESSSNAGSGKPIEIPPPRPKRKPMHPYPRKLIHSIKKGILIPEQQERSPSPNLSISEQENRSPTSVFSAIGSDTMESTISNPQNGSPSPVSSAAGVIPVSSLPSEQENGCPSNTSLAREENGSQSSVLATASSTPHDQSVMKLDLGYKSNVDKEENSTMEAPTRSLKLFGRTVLVTDSHRPSSSSVGIRKSSVPESHQQNFDANEGKPVRTSPCNPIQSDFALDTKKSAWSPWPCGGPAMFYYMQSQKEDPNLVEPASAAPLPLWTLYGGLPFPLLPSLNPTSIEMFPNSCLEEDSEEKENQNKEGSWTGSNTGSVSEVGMGDKNGDVVDSQSQNDKEREQGLFSQLKLSEMSAYSDRRASPEKCMKGFVPYKRCLAERDAQSMGIRGEEREGQRIRLCL*	506

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl04g01983	505	CDD	SANT	57	100	IPR001005	-
	Eupl04g01983	505	PANTHER	SWI/SNF COMPLEX-RELATED	20	451	-	-
	Eupl04g01983	505	SUPERFAMILY	Homeodomain-like	49	103	IPR009057	-
	Eupl04g01983	505	MobiDBLite	consensus disorder prediction	435	449	-	-
	Eupl04g01983	505	FunFam	protein REVEILLE 6 isoform X1	57	105	-	-
	Eupl04g01983	505	SMART	sant	54	102	IPR001005	-
	Eupl04g01983	505	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	53	102	IPR006447	GO:0003677
	Eupl04g01983	505	Pfam	Myb-like DNA-binding domain	55	98	IPR001005	-
	Eupl04g01983	505	Gene3D	-	57	104	-	-
	Eupl04g01983	505	ProSiteProfiles	SANT domain profile.	53	104	IPR017884	-
	Eupl04g01983	505	ProSiteProfiles	Myb-like domain profile.	50	100	IPR001005	-
	Eupl04g01983	505	MobiDBLite	consensus disorder prediction	150	244	-	-
	Eupl04g01983	505	MobiDBLite	consensus disorder prediction	397	450	-	-
	Eupl04g01983	505	MobiDBLite	consensus disorder prediction	284	320	-	-
	Eupl04g01983	505	MobiDBLite	consensus disorder prediction	104	131	-	-
	Eupl04g01983	505	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	50	104	IPR017930	-
	Eupl04g01983	505	MobiDBLite	consensus disorder prediction	410	424	-	-
	Eupl04g01983	505	MobiDBLite	consensus disorder prediction	145	246	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl04g01983	Eupl-Chr4	46951526	46954821	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Eupl04g01983		Myb_DNA-binding	4e-14	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl04g01983	-		-	nnu:104589545	572.007