Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01970 ATGGTGGTGACGACGATCGTCGACTCCAGTGCATCTGTGCACTCCACTTTCGCTTCAAGATATGTCCGCACTTCATTGCCCAGGTTCAAGATACCTGATAACTCGATCCCTAAAGAGGCGGCGTACCAGATCATCAGTGACGAGCTGATGCTTGACGGGAACCCCAGGCTGAATTTAGCTTCCTTTGTGACCACTTGGATGGAGCCCGAGTGCGATAAGCTCATCATGGCTTCCATCAACAAGAACTACGTCGACATGGATGAGTACCCCGTCACCACGGAGCTCCAGAATCGGTGTGTAAATATGATAGCCCACCTCTTCCATGCTCCAACCAAAGAGGGTGACAACGTGGTGGGAGTTGGTACGGTGGGGTCATCAGAGGCTATAATGTTGGCTGGACTGGCATTCAAGAGAAAGTGGCAAAACAAGAGGAAGGCCGAGGGCAAACCCTACGACAAACCCAACATCGTCACTGGCGCAAATGTTCAGGTTTGCTGGGAGAAATTCGCAAATTATTTTGAAGTAGAACTTAGGGAGGTGAAGTTGAAGGAGGGATACTACGTTATGGACCCTGTGAAAGCAGTGGAAATGGTGGATGAGAACACCATCTGTGTTGCTGCCATCCTGGGATCAACCTTGACTGGGGAGTTTGAGGACGTTAAGCTCCTAAACAAGCTTCTCACTGAGAAGAATAAGGTGATCGGTTGGGACACGCCAATCCATGTTGATGCTGCCAGTGGAGGATTCATAGCTCCCTTCCTATACCCGGATCTTGAGTGGGATTTCCAGCTGCCACTAGTGAAGAGCATCAATGTCAGTGGCCACAAGTATGGCCTAGTTTACCCTGGTGTGGGCTGGGTTGTGTGGAGGACCAAAGCGGACTTGCCCGATGAGCTCATCTTCCACATCAACTATCTTGGATCTGACCAACCCACTTTCACCCTCAACTTCTCTAAAGGCTCCAGTCAAATAATTGCGCAATACTATCAATTCATACGCCTCGGCTTTGAGGGGTACAAGAACATCATGGAAAACTGCACGGAAACTGCGAAGGTGCTGAGGGAAGGGATAGAGAAGATGGGTCGGTTTGAGATAGTCTCGAAGGAAATAGGTGTGCCGCTCGTGGCCTTCTCTCTTAAGGATACTAGCAAGCACACCGTGTTTGAGATATCTGAGAGTCTGAGGAGGTTCGGGTGGATTGTCCCGGCGTACACAATGCCAGCAGACGCCCAACACATTTCCGTCCTCCGAGTGGTGATTAGGGAGGATTTTAGCCGGAGCTTGGCCGAGCGACTTGTCTCTGACCTAGAGAAGGTGTTGAAGGAGATCGACGAACTTCCAAGCCGGATGACAACTAGAGTTGCTAATGTTACAGCTATTGTGGATGAAACAAGGAAAGGTGAAGGAGACGGACATGTAGTTAAGAAGAGTGCGAGAGAGATCGAAGAAGAGATCACCAAGCATTGGAGGAGGGTGGTGAATAGCAACAAGACTAGTGGGGTCTGCTGA 1509 0.4997 MVVTTIVDSSASVHSTFASRYVRTSLPRFKIPDNSIPKEAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFHAPTKEGDNVVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFANYFEVELREVKLKEGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNKLLTEKNKVIGWDTPIHVDAASGGFIAPFLYPDLEWDFQLPLVKSINVSGHKYGLVYPGVGWVVWRTKADLPDELIFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCTETAKVLREGIEKMGRFEIVSKEIGVPLVAFSLKDTSKHTVFEISESLRRFGWIVPAYTMPADAQHISVLRVVIREDFSRSLAERLVSDLEKVLKEIDELPSRMTTRVANVTAIVDETRKGEGDGHVVKKSAREIEEEITKHWRRVVNSNKTSGVC* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01970 502 NCBIfam glutamate decarboxylase 15 443 IPR010107 GO:0004351|GO:0006536|GO:0030170
Eupl04g01970 502 SUPERFAMILY PLP-dependent transferases 13 443 IPR015424 -
Eupl04g01970 502 FunFam Glutamate decarboxylase 1 64 - -
Eupl04g01970 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 32 380 IPR002129 GO:0016830|GO:0019752|GO:0030170
Eupl04g01970 502 FunFam Glutamate decarboxylase 360 447 - -
Eupl04g01970 502 FunFam Glutamate decarboxylase 65 359 - -
Eupl04g01970 502 Gene3D - 65 359 IPR015421 GO:0003824
Eupl04g01970 502 Gene3D - 1 64 - -
Eupl04g01970 502 CDD DOPA_deC_like 58 438 - -
Eupl04g01970 502 Gene3D - 360 447 - -
Eupl04g01970 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01970 Eupl-Chr4 46579099 46587228 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01970 5 499 Calmodulin-binding Proteins AT2G02010 78.384 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01970 K01580 - nnu:104611028 852.818