Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01960 ATGGGGGCGGGAACGACGAAGAAGGTACAGCGGAAGTTCAAGATAAGAGGCTACTCCATCAAAGTGGAGGCTCTGGAAGAGATCTCCTCCTTCTTGAACCGCTTCGAAGACGCCGAAGACGAAGCTCTCGAACTCCTCCTCGACGAGCTCGACAAGGAATCCCTAAAATCATCCATCCTTGACAAGGATTCCGTGCACCGTGTCGTCAGCCTTTTGTTGGAAGCCGAAGCCGCTGTCGAGGCTAGCCCCAGCTCCAGTAACCGAGTCCCTCTTCGCATTATTGACGCCTTCCATATCCCCAAATTTCGCTACAATCCCATGAAGAAGCTCTTCTACGAGCACACGGGGAAGATTCAGATTCACGGTGATGCTTCCGCGAAAGCTGCTTTGTACAGGGATAGGTTTCAATTGCTGCTACAGAGGCTTTCTCGTGATCGCCATTTTTCAAAACCTGCTTTTGATCTCGAAATGACACACTCTGGAACCGGAAGCTGTGAGGTATCTCCAATTCAATCTCTGATTGGGCGTACTGGGAGGAGATGGATCATGGGTGTAATATCTCAGTTGGAAGATGGTCATTTCTACTTGGAAGATCTAACTGCAGCAGTACCAAACACTATTATTGTTGCAGAAGGTGAGCTGCTCCCAAGTGGTATTTTTCAGGTCAATACATGTGGATTTCCTCCTTTGGAGGACAGAGATGAATCACTTGCATTACTTGTGGGACTCGACTTCTTTGGTGGAGGTGCTCTCACAGTGGAAGAAACGCTCAGACTCTCAGGTCTGGAAAAGAAGGCAGTGAATGACATGTTTATCATCCTCTCTGATATATGGTTGGATAATGAAGAGACTATGGAAAAGCTAGCCACTGTACTGGATGGTTATGAGAATATGGAGGTGGTGCCTTCTTTATTTGTCTTGATGGGGAATTTCTGCTCTCGCCCATGTAACCTGGCCTTTAATTCTTTCTCAAGTCTTAGATTGCAATTTGGAAGGCTCGGAGAAATTATTGGAGCCCATCCACGACTAAAGGAACACAGTCGATTTCTGTTTATTCCTGGTCCTGATGATGCAGGTCCATCAACAGTTCTGCCCAGGTGTGCATTACCAAAATATCTGACAGAAGAGCTCCAGAAGCACATTCCGAATGCCATATTCTCAAGTAATCCTTGCAGAATCAAGTTTTACACCCAAGAAATTGTATTTTTCCGTCAAGATCTCCTGTATAGAATGCGTCGTTCCTGTTTGATCCCCCCTTCAACGGAAGAAACCAGTGATCCTTTTGAGCATCTTGTTGCTACCATTACTCATCAGAGCCATCTATGCCCCCTCCCTCTCACTGTACAACCCATTATCTGGAACTATGACCATTGCCTTCGCCTGTATCCAACCCCACATACGATAGTGTTGGGGGACAGAAGTGAGCAGAAAACATTCAAGAGCACAGGAATAACATGTTTCAATCCTGGTTCCTTCTCCAATGACAGTACATTTGTGGCGTACCGCCCTTGCACTCAGGAAGTCGAGTTGTCTTCCTTGTAA 1542 0.465 MGAGTTKKVQRKFKIRGYSIKVEALEEISSFLNRFEDAEDEALELLLDELDKESLKSSILDKDSVHRVVSLLLEAEAAVEASPSSSNRVPLRIIDAFHIPKFRYNPMKKLFYEHTGKIQIHGDASAKAALYRDRFQLLLQRLSRDRHFSKPAFDLEMTHSGTGSCEVSPIQSLIGRTGRRWIMGVISQLEDGHFYLEDLTAAVPNTIIVAEGELLPSGIFQVNTCGFPPLEDRDESLALLVGLDFFGGGALTVEETLRLSGLEKKAVNDMFIILSDIWLDNEETMEKLATVLDGYENMEVVPSLFVLMGNFCSRPCNLAFNSFSSLRLQFGRLGEIIGAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKHIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVLGDRSEQKTFKSTGITCFNPGSFSNDSTFVAYRPCTQEVELSSL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01960 513 PIRSF DNA_pol_epsilon_2 3 513 IPR016266 GO:0003677|GO:0006261|GO:0008622
Eupl04g01960 513 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 5 513 IPR016266 GO:0003677|GO:0006261|GO:0008622
Eupl04g01960 513 Coils Coil 21 41 - -
Eupl04g01960 513 Gene3D - 4 70 - -
Eupl04g01960 513 Pfam DNA polymerase alpha/epsilon subunit B 271 478 IPR007185 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01960 Eupl-Chr4 46305684 46314687 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01960 16 470 Core DNA Replication Machinery Family AT5G22110 66.030 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01960 K02325 - msin:131227652 885.945