Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01951 ATGTGCACCAGAGGCCACTGGAGACCAGCCGAAGATGAGAAGCTCAGGGAACTCGTGGAGCGGTATGGCCCTCATAATTGGAACGCCATCGCCGAAAAGCTCCAAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTTAATCAGCTAGATCCAAGAATCAATCGAAGCCCTTTTACAGAAGAGGAAGAGGAACGACTTCTCGCATCTCACAGGATCCATGGGAACCGATGGGCAGTTATCGCGCGGCTTTTCCCCGGGCGTACTGATAACGCGGTAAAGAATCATTGGCATGTGATAATGGCACGAAGGTGTAGAGAAAGATCGAGGTTTTACGCAAAGCGAGCTGCTCAAAATTTGATTAATGAACGGAAATCGTCAATGAAACAAAACGTACAGATGCAAACCGAGCCGAGGAAGCTTACTTCTTTGATGGAGAAGTACTATCAAAAATTTGATGATCCGATCATTCATAGCTGCCACCCTAGTCTAAAGGAATTATACCCTCAAATCCCTAGTTATTGTCCGAAGATGGTTGAAGATAGAAATAACCCAGTCGAGTTTTACGATTTTCTCCGTGTAAACACCGACTCTAACCGAAGCGAAGTGATAGATCATACAAGAAAAGATGAGGAAGAGGTGGAACAGGAAACTAAAGAGCAAGAGAATGAGGCCAGCATCCCATTCATAGATTTCTTAGCGGTGGGAAGCTCTTCATAA 720 0.4528 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRFYAKRAAQNLINERKSSMKQNVQMQTEPRKLTSLMEKYYQKFDDPIIHSCHPSLKELYPQIPSYCPKMVEDRNNPVEFYDFLRVNTDSNRSEVIDHTRKDEEEVEQETKEQENEASIPFIDFLAVGSSS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01951 239 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Eupl04g01951 239 Pfam Myb-like DNA-binding domain 7 67 - -
Eupl04g01951 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Eupl04g01951 239 Gene3D - 57 144 - -
Eupl04g01951 239 SMART sant 55 103 IPR001005 -
Eupl04g01951 239 SMART sant 3 52 IPR001005 -
Eupl04g01951 239 MobiDBLite consensus disorder prediction 202 224 - -
Eupl04g01951 239 ProSiteProfiles Myb-like domain profile. 4 50 IPR001005 -
Eupl04g01951 239 MobiDBLite consensus disorder prediction 202 226 - -
Eupl04g01951 239 FunFam MYB transcription factor 4 55 - -
Eupl04g01951 239 CDD SANT 58 98 IPR001005 -
Eupl04g01951 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Eupl04g01951 239 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Eupl04g01951 239 Coils Coil 204 224 - -
Eupl04g01951 239 FunFam MYB transcription factor 57 132 - -
Eupl04g01951 239 Gene3D - 4 55 - -
Eupl04g01951 239 CDD SANT 7 48 IPR001005 -
Eupl04g01951 239 PANTHER MYB PROTEIN-RELATED 4 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01951 Eupl-Chr4 45985312 45987291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01951 1 239 MYB Transcription Factor Family AT1G17950 57.895 7.22e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g01951 Myb_DNA-bind_6 8.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01951 K09422 - ming:122063134 380.178