Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01936 ATGGGGGATGAGCATTTTAGCAAGGGGCAGGAGGTGGAGGTTAGCAGCGACGATGTGGTCTTCAGAAAAATGAGGGATGTGCATTTTAGGAGGGGGCAGGAGGTGGAGGTTAGCAGCGACGACGTGGGTTTCAGAGGTGCATGGTACGTCGCAACCATCATCAGGTTACCGTTGAAGTCTTCTCCATCAAAGAAGAAGAGAAAGTTCTTGGTTGAGTACGAGAGTTTAATAGCCGACGAAGAAGGAACGAAGCCGTTAAGGGAGTACGTTGATGCGTGGCACATTAGGCCTCGGCCGCCCCGAGAACTTAATCCGGTGTTTGATCGTAACGAAGAAGTCGACGCGTTCCACAACGACGGATGGTGGGAAGGAGCGATTTCCAAGGTTCTTGAGAACTCGAGGTATGTTGTGTACTTCAGGAATTCAGGCGAGGAGATGGAATTCGGGTTGTCAGAGTTACGGGTTCATCTCGAATGGGTTGATGGACGGTGGACTCGGCCCCAAGTGCAGCAGCAGCAGCTGGGAACAACGAGTTTGCAGTTTAGCTTTGGAACACTGGTAGAAGTGAGTCTTGAAGATGAAAATTGCCATGGTGCTTGGTTCCCAGCAACTGTACTCAGAGGAATTGGTAACGACTCCTACATGGTGGAGTACCAGAGTTTAGGGTTGGGTGATGAGAGAAGATCCTTAAAAGAAACCGTGGACTCTTCACATATCCGGCCTTCCCCTCCTCAAACTTCAGACAACCAAAATTTCCATCTATTGGAAAAAGTGGATGCCTTGTACAATTTTGGCTGGTGGAGTGGAGTAATTACCAAAGTTCTTGCTGGTATGAGGTACAATGTCTACTTTAAGCATTGGAATGAAGAGAAGGAATTCGATCTATCGAAATTAAGGCTTCATATGGACTGGATCGATGGAAAATGGGTACATGATTCCTGGGAAATCTCAATCACATCACATAATCCAGTTGGGATTAAATCTATTGATAAAAAACAGTTGGGGCCAGCCAACAACACTGCTCAAAGCAGTGAGATGGCTATTCAACTTACAAGTCCGGGTGCTTCCGATGATGCTGCTGAAGATACATCACCTTTGTGTGCCACAAACTCAAGCAAGAAGACTACATACTCAACCCATCACAGTGATGCTGAATTATCACAGCCTTGCAAGAAGCTAAAGAAAGGGGAAGCAGCAGAGGCGTCATTCTCTCTAATCTCATGCTCTGTTAGAGCAATTTCTCCTGGAACTGTGATTGAAGCGGATGCACCAAATGATTCCACCCCAACCTTAAAAGGTCCTGAATACAAAGCATCCAGGGGAGAAATGACTAATGAAGTTGTTCAAACAGAATCTGTACCAAAAGAAGTTGAAATGCTCGCCACAGGAGTTTCGAGCAATATTTCAGATGACGAACAACCACTATCCCTGTGGCTAAAAGTGACGGGTAACGAGGGTGTTTTGCCAGACCAACTTGTATCCCAATCTAACAAGGCAGTCACCTGGGATGCATCAGTCATGGACCTTGAACTTCAAAAGTTGTGTAACATGACCAAGAGTTCTTTCAGTTTGGAGGAATTCACATCTGCCCATAACCAATGTGATGGTGCAAGAATAGAACAAAATGAGATTCTGCATTTTGTCGATAAACACTGTAATAAGATAAGAGGAAAACCAAATGAGGTTTTTCTGCAGTCTCCTGTGATTGATCCTATCCGCGACAAGGTGTCAATAGGGAATGGAAGTTTGCCTTTCACGAAGAGTTCATTTATGTGGGAGAAGGTTGAATCCATGGGAATATTCTGCATTCTGCCACAAAATCCACATTTTCGTCCATTGGAACAATATAACAAGGAGCATCGCGAGGGAATGGCCATAGGACACATGGTAACATTTGCCAATTTGGTGGGAAAAATATGCGATTTGCAACTCAACAACCCTAGGAGCGACCTTGAAGACATATCGAAGGCCCTTGTTGATTTGGAATTGCTTGGATTTAATGTTCAGAAAGTCCGAGTTCGACTAAAGGAGTTGCTTAGAATCAAAGATGAGCAAGGACTGCTTGAGGAAAAAGCAGATACAGTTAAAGGCCAGATCGTTGAGAAGAACCGCGACAATGATAAATTCGATGAAGAAATCGATGAGATTGATGAGAGTCTTAGGGAACTACAACAATCCATCAATTTATTGAGCAAGAGACGGACATCGGTTGTGAAGAACAAGGAAATTAACGGCTCTAATATCGCTACGTTGCAAATGACAGTGGATGCAGTAGATCGAAGCATTCGGCATGCTGGATATGATTTTGATAGTATCGTTGCAACCCCTTGGTGA 2334 0.446 MGDEHFSKGQEVEVSSDDVVFRKMRDVHFRRGQEVEVSSDDVGFRGAWYVATIIRLPLKSSPSKKKRKFLVEYESLIADEEGTKPLREYVDAWHIRPRPPRELNPVFDRNEEVDAFHNDGWWEGAISKVLENSRYVVYFRNSGEEMEFGLSELRVHLEWVDGRWTRPQVQQQQLGTTSLQFSFGTLVEVSLEDENCHGAWFPATVLRGIGNDSYMVEYQSLGLGDERRSLKETVDSSHIRPSPPQTSDNQNFHLLEKVDALYNFGWWSGVITKVLAGMRYNVYFKHWNEEKEFDLSKLRLHMDWIDGKWVHDSWEISITSHNPVGIKSIDKKQLGPANNTAQSSEMAIQLTSPGASDDAAEDTSPLCATNSSKKTTYSTHHSDAELSQPCKKLKKGEAAEASFSLISCSVRAISPGTVIEADAPNDSTPTLKGPEYKASRGEMTNEVVQTESVPKEVEMLATGVSSNISDDEQPLSLWLKVTGNEGVLPDQLVSQSNKAVTWDASVMDLELQKLCNMTKSSFSLEEFTSAHNQCDGARIEQNEILHFVDKHCNKIRGKPNEVFLQSPVIDPIRDKVSIGNGSLPFTKSSFMWEKVESMGIFCILPQNPHFRPLEQYNKEHREGMAIGHMVTFANLVGKICDLQLNNPRSDLEDISKALVDLELLGFNVQKVRVRLKELLRIKDEQGLLEEKADTVKGQIVEKNRDNDKFDEEIDEIDESLRELQQSINLLSKRRTSVVKNKEINGSNIATLQMTVDAVDRSIRHAGYDFDSIVATPW* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01936 777 CDD Tudor_Agenet_AtDUF_rpt2_4 110 155 - -
Eupl04g01936 777 MobiDBLite consensus disorder prediction 363 384 - -
Eupl04g01936 777 Pfam Protein of unknown function (DUF724) 583 776 IPR007930 -
Eupl04g01936 777 CDD Tudor_Agenet_AtDUF_rpt1_3 29 100 - -
Eupl04g01936 777 SMART agenet_At_2 250 306 IPR014002 -
Eupl04g01936 777 SMART agenet_At_2 179 247 IPR014002 -
Eupl04g01936 777 SMART agenet_At_2 27 103 IPR014002 -
Eupl04g01936 777 SMART agenet_At_2 105 161 IPR014002 -
Eupl04g01936 777 MobiDBLite consensus disorder prediction 350 387 - -
Eupl04g01936 777 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 179 721 - -
Eupl04g01936 777 CDD Tudor_Agenet_AtDUF_rpt2_4 254 300 - -
Eupl04g01936 777 CDD Tudor_Agenet_AtDUF_rpt1_3 181 244 - -
Eupl04g01936 777 Pfam Agenet domain 111 168 IPR008395 -
Eupl04g01936 777 Pfam Agenet domain 184 244 IPR008395 -
Eupl04g01936 777 Pfam Agenet domain 32 100 IPR008395 -
Eupl04g01936 777 MobiDBLite consensus disorder prediction 419 441 - -
Eupl04g01936 777 Coils Coil 706 733 - -
Eupl04g01936 777 Gene3D - 166 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01936 Eupl-Chr4 45218321 45228205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01936 43 159 PHD Transcription Factor Family AT5G58610 27.857 1.74e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01936 - - jcu:105647314 382.489