Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01924 ATGTTAGGCAACAACGCTTCAACTGTTCCTTCTGAGGCATTTACTTGCTTAGAAAATGGGAATAACAGTAAAAGGAAAAGAAGGCCGGCAGGAACTCCAGATCCTGATGCGGAGGTGGTTTCTCTCTCACCGAAGACGTTATTGGAATCCGATCGATATGTTTGCGAGATCTGTAACCAAGGATTTCAGAGAGATCAGAACCTTCAGATGCACCGGCGAAGGCATAAGGTCCCATGGAAGCTGCTCAAGAGGGAGACTCCGGAAGTGAGGAAACGGGTGTTCGTGTGTCCAGAGCCGAGTTGCTTACACCATGATCCTTGCCACGCACTGGGTGATCTCGTCGGAATAAAAAAGCATTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTCTGTGATAAGTGTTCCAAAGGGTACGCTGTTCAATCAGATTACAAGGCCCATCTCAAGACCTGTGGCACCAGAGGTCATTCTTGTGACTGCGGCCGCGTTTTCTCGAGGGTGGAAAGCTTCATTGAACACCAAGATGCTTGCAATGCCGGAAGAATCCGGTCTGAATTACAGACACTGCAATCGGCCTGCTTATCTCGAACAGCTTCAAGCCCTAGTCCGTCCAGCGACACAAATTTTAGTACAGTTCCTTGGCCTGGTTTGAGGATGACAAAACCGACGGAGACTGTCTTCTTATGCCCAGAACGAAACAATCGAAATAATCCTTGTACGACTGATCACCATCATAATCTAGAGCTTCAGCTCTTACCCTCTTCGAATCCTCTCTTGAACTCCTTGGATGTATCCGTTTCTCTAAATTCAGATGAAAATCATGCTACCCAACTGCAACTCTCAATTGGCTCATGCGACCATAGCGAGAAAAATGAATCAAAGCACCCCAATTCGAACAATGATGCAGGAAAAAACTCTACTGGGGCTAACAATGTCATGATCGAAGAACCAGCGTTGGCAGCGTCAAGGCTGAAAGAACAGGCACAGGAGCAGCTAAGGCTTGCCATGACCGAGAAGGCCTTAGCGGAAGAGGCTAGACAACAAGCAAAGAGGCAGATTGAATTAGCTGAGCAGGAATTTGCCAACGCCAAGAGAATCAGGCAGCAAGCACAAGCTGAACTCGACAAGGCACAAATCCTCAAAGAGCATGCAACCAAGCAAATCAATTCTACGATCCTCCAAATCACTTGTCATGCCTGCAAGCGACAGTTCCAAGCGACGACGACATCGGCTCCTCCAGACGAGAACTCCCTCGTCGTGAGTTATATGTCTTCAGCTATAACAGAAGGCGAAGGAGAGAACGATAACCGTAATCATCAAGCAAAATTCTCAAAATCATAG 1344 0.474 MLGNNASTVPSEAFTCLENGNNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPEVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNAGRIRSELQTLQSACLSRTASSPSPSSDTNFSTVPWPGLRMTKPTETVFLCPERNNRNNPCTTDHHHNLELQLLPSSNPLLNSLDVSVSLNSDENHATQLQLSIGSCDHSEKNESKHPNSNNDAGKNSTGANNVMIEEPALAASRLKEQAQEQLRLAMTEKALAEEARQQAKRQIELAEQEFANAKRIRQQAQAELDKAQILKEHATKQINSTILQITCHACKRQFQATTTSAPPDENSLVVSYMSSAITEGEGENDNRNHQAKFSKS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01924 447 MobiDBLite consensus disorder prediction 1 20 - -
Eupl04g01924 447 SUPERFAMILY beta-beta-alpha zinc fingers 52 150 IPR036236 -
Eupl04g01924 447 Coils Coil 326 388 - -
Eupl04g01924 447 MobiDBLite consensus disorder prediction 197 215 - -
Eupl04g01924 447 MobiDBLite consensus disorder prediction 286 310 - -
Eupl04g01924 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Eupl04g01924 447 CDD ATP-synt_Fo_b 321 391 - -
Eupl04g01924 447 MobiDBLite consensus disorder prediction 197 218 - -
Eupl04g01924 447 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Eupl04g01924 447 SMART c2h2final6 94 124 IPR013087 -
Eupl04g01924 447 SMART c2h2final6 53 75 IPR013087 -
Eupl04g01924 447 SMART c2h2final6 130 157 IPR013087 -
Eupl04g01924 447 MobiDBLite consensus disorder prediction 433 447 - -
Eupl04g01924 447 Gene3D Classic Zinc Finger 31 95 - -
Eupl04g01924 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 404 IPR031140 -
Eupl04g01924 447 Gene3D Classic Zinc Finger 115 193 - -
Eupl04g01924 447 FunFam protein indeterminate-domain 12-like 32 100 - -
Eupl04g01924 447 MobiDBLite consensus disorder prediction 426 447 - -
Eupl04g01924 447 Pfam Zinc finger, C2H2 type 53 75 IPR013087 -
Eupl04g01924 447 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01924 Eupl-Chr4 44742481 44745233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01924 19 435 C2H2 Transcription Factor Family AT2G01940 54.839 3.06e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl04g01924 zf-C2H2 0.0042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01924 K25871 - nnu:104607231 731.095