Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01923 ATGACGCACTTGAACCTTACTGGTTGCAAGAAAAGGAAGAGAGGTGAGAGGGTCTTTAGGTTCAAAACTTTTTGCGAACCCGGACACCCAGTTGATTTTAATGGCCGGTTTTGTGAGAACATCAAGAAGCTTCTTGAATTTGCACGTCTGGAGACTAGTTTATGTGGAGGAATGAAAAACTGGTCATTCCAACTCGAACTCCATCGCAATCCACCGGTCTATATCTCGTTGTTTGTGATCGAAGAATTGATCGAGGCATCCGTCTCTCGTCACTGCCATCATTGCCAATACGTAGGCTGGGGGCATCATATGATTTGCAACAAGAGGTTTCACTTTGTGGTGCCTTCAAAGGAAACAACCTCGACAATGGCGTTGTGTTCAAGTTATGATGGCAATGGTGGAAGATCGGACACGACAATTGGAAAGTCAAATTTTGTGGAGTTACAGGGCCACCTCTTGCATGGTGTCTTGCACTCCAATGGGTTCGGGCATTTGATCAGCGTTAATGGGATTGAGAAGGGTTCAGAGTTGGGCGGAAATGAGTTAATGGACTTTTGGGATCAGATATGCACTGGATTACGAGCAAGAAAAGTGAGCATAAACGACGTTGCAAAGAAGAGAAGCATGGATTTGAGGTTAATTCATGGCGTAGCCTATGGAGAACCATGGTTCGGTCATTGGGGCTACAGATTTGGCCGTGGAAGCTTCGGTGTCACTCAGCCAATTTACCAGAAAGCTATAGAAGCCATACAAAACATGCCCTTATGCTTGCTCATTCATCATTTTAGTAGTTCAAATCATGAAATTCTCATCCTCTTAAATAAATATCAAACAATGTCAGGTCATTCCTTGTCGACGCTAAGCCATCTATTCCGTTTCATGCAAGAATTAAAGGGCCGCCTTCCAGTAGAGCCTTGTATCACTTCACTTAAAACAGGGATTGTGGCAGAAATTACTTGTAGATGGTCACCAAAGCGAGTCGAAATGGCGACCAGAGTGATTGTTGAAGCGTTAAGGAAGGCGGAGTTCAGATGGGTCTCAAGGCAAGAAGTAAGGGATGCTGCTCGCGCTTATATTGGTGATACCGGCTTACTCGATTTCGTGCTGAAATCCTTAGGGAATCATATTGTGGGGAATTACGTAGTTCGCCGCACTCTAAACCCAGTGACCAAAGTTCTAGAATACTGCTTGCAAGATATCTCTAATATGTTTACAAAACAAGAAGGTTTATCTCTGAACGATCACAGAACGACAGAATGTTACCAAGTTACGCGAATTCAGCTCATGAAAGACATGTTCTACTTGTACAAATACATCCTCAAAGAGCAGAAGCTAACACTAACTACAGGGATAACGTCCGCGATCCCGATAGCTACGAGAATAATTCTCGATTCCAAGCATCTTATCAAAGATTACAAAGGAGAGTTATCTCCAAAACTTGAAATCGGCGAGGAAGAAAATCTAAAGCTTCTATGCACAATTTCTTTGAGAAACAAGGAAGACGGCAATGAAGGGATAAAGAAAGCTTTGCAACCATGTGAATTGATCATTTTGCCTGCTCATGCTACCTTCGGAGAGCTTAAGAAGGAAGTAGAGAACAGTTTTAAGGAGACGTATTGGGGTTTAAAGAGCTTTGTTGTAGATTCTATAATGGACGTGCATGCCAATGAATCAGATTTGGTTTTTGGGCTGGTTGACGCAGGTTGTAACCTTACAGTTTCTGGGAGGATCGTAGATACTGGTACTGACATTGAAGGAATTTATGAGAATAGGAAGGATAACTGCATCATTGATTGCCTTTGTGGAGCCAAGGAAGATGATGGGGAAAGGATGATCGCGTGCGATATTTGCGAAGTTTGGCAGCATACTCGTTGTGTTCGGATCTCGAACGCTGAAGACGTCCCGCATATCATTATCTGTAGTCGGTGTGAGAACGAAATCAATTTCTTCCGTTGTTTACCATGA 1965 0.431 MTHLNLTGCKKRKRGERVFRFKTFCEPGHPVDFNGRFCENIKKLLEFARLETSLCGGMKNWSFQLELHRNPPVYISLFVIEELIEASVSRHCHHCQYVGWGHHMICNKRFHFVVPSKETTSTMALCSSYDGNGGRSDTTIGKSNFVELQGHLLHGVLHSNGFGHLISVNGIEKGSELGGNELMDFWDQICTGLRARKVSINDVAKKRSMDLRLIHGVAYGEPWFGHWGYRFGRGSFGVTQPIYQKAIEAIQNMPLCLLIHHFSSSNHEILILLNKYQTMSGHSLSTLSHLFRFMQELKGRLPVEPCITSLKTGIVAEITCRWSPKRVEMATRVIVEALRKAEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYVVRRTLNPVTKVLEYCLQDISNMFTKQEGLSLNDHRTTECYQVTRIQLMKDMFYLYKYILKEQKLTLTTGITSAIPIATRIILDSKHLIKDYKGELSPKLEIGEEENLKLLCTISLRNKEDGNEGIKKALQPCELIILPAHATFGELKKEVENSFKETYWGLKSFVVDSIMDVHANESDLVFGLVDAGCNLTVSGRIVDTGTDIEGIYENRKDNCIIDCLCGAKEDDGERMIACDICEVWQHTRCVRISNAEDVPHIIICSRCENEINFFRCLP* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01923 654 CDD PHD_MMD1_like 598 643 - -
Eupl04g01923 654 Pfam PHD-finger 599 645 IPR019787 -
Eupl04g01923 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 648 IPR013083 -
Eupl04g01923 654 SMART PHD_3 598 644 IPR001965 -
Eupl04g01923 654 SUPERFAMILY FYVE/PHD zinc finger 592 648 IPR011011 -
Eupl04g01923 654 ProSitePatterns Zinc finger PHD-type signature. 599 643 IPR019786 -
Eupl04g01923 654 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01923 Eupl-Chr4 44553723 44558205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01923 10 654 PHD Transcription Factor Family AT5G22260 50.000 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl04g01923 PHD 1.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01923 K26271 - nnu:104607232 913.294