Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01922 ATGGCTTTCCTTTTCGTGTTTTGGTTCGGAGTTTTAGCTGTTTTATCGTCCCAAAAACCATCATTTGTTGTCGACTCGGCCGCTTTAAACACTCTTACCGATAAGGAGGCCTTGCTCTCATTTAAGACAACTGCCGACCCTTCCAACATCCTATCCACATGGAACAAAAACATGATTCTATGCAATTGGACCGGAGTCGTATGCAACGAAATCAGGCAAAGAGTTGTCGGTCTAGATCTACAGGGCCTCGGATTATCAGGCACCGTAAGCCCACATCTTGCCAATCTCTCTTTCCTCCGTTCTCTTCATCTACAAAACAACCAGTTTTCTGGAATTCTTCCTGATCGAATAGGTGATCTTTCTCGCTTGCGTGTTCTAAACATGAGTTCAAACCGCATCCAAGGTGCAATCCCACGTAACATTCGCAGATGCTTGGAGTTGGTAGTCCTAGACTTGACGGGAAATGAGGTCTCGGGTGTTATTCCTATGGAGCTCGAGCGTCTTTCAAAGCTCCAAGTCCTAAAGTTGAGAGGAAACCAGCTTTCAGGTGCAATTCCTCCATCCATTGGAAACCTCTCATCACTCACCACACTAGAGTTAACCACCAATTCTCTTGGTGGAACCATACCCAGCGACTTAGGCCGTCTTCGAAACTTAGAACATCTCCAACTCTCCAGTAACTATCTCACGGGTATGGTTCCTCCTACCTTATACAACATTTCTTCCCTTGTCTTAATTGATTTGGCTTCAAACCAGCTGTGGGGTAAATTTCCAAGTGATGTCGGTGACACGCTCCCCAATCTTTTAGAGTTCAAGTTTTGCTTGAACAAATTCACTGGTGGACTTCCAGGATCGCTACACAACCTCACCAAGATCCAAGGCATTCGGATATCAAATAATTTTCTTGTTGGATCAGTTCCACCAGGACTAGGGAATCTCCCTGACCTCCGACTGTATAAAATTGGGTTAAATCGGATCGTAAGCTCTGGCGATGCTGGACTGAGTTTCATCAATTCTTTGACAAATTGCACCCATCTTGAATTCCTCTCATTTGATGGCAATCTTCTAGAAGGTGTGATTCCAGAATCCATCGGCAATCTTTCAACTGTTCTCACCAAATTATATATGGGTGGGAATCGGATCTACGGCAATATACCTGCCTCAATCGGCCGCCTTAGAGGTTTGGATTTGCTAAATTTAAGCCATAATTCAATTTCCGGTGAAATTCCATTTGAAATTGGCCAACTCAAGGAACTACAGAAGCTGGATTTGGCTGGAAATAAAATAGCCGGTGAAATTCCAGCCTCCCTAGGAAATCTGAGCAAACTGATTGAGCTTAAATTGTTTGGGAATGAGCTGGTAGGAAGAATACCAACTACTTTCGGTAACTTCCAACGCTTACTTTGGTTGGATCTATCCAAAAATATGCTCAATGGTAGCATACCCAAAGAAGTTTTCAGGCTCTCCAGTTTGAGCATTCTTCTCAACTTATCCAAAAACTCTCTAATTGGACCTTTGCCTCAAGAAGTTGGGAACTTGGAAAATATAATGACAGTTGATCTCTCGCATAATGCCTTGTTCGGAAATATTCCGGCCTCAATCGGCAACTGTAAGAGCTTGGAGGAACTGTTCATGGCCAAGAATTTATTCTCGGGCCATATTCCTAATACTTTAAGAGGGGTGAAAGGACTGGAGACTCTAGACCTCTCCTCAAACCAACTCTCAGGTCCCATTCCTGATGATCTTCAAAAACTTCAGGCCCTCAAATTATTGAACCTCTCTTACAATAATCTCGAAGGAGAAGTTCCAAATGACGGTTTCTTTACAAATCTCTCCAAAGTCCATCTCCAAGGAAACACGAAACTTTGCTTTCCTTCAGCCTGTGAGAGCAATCAAAGTCATGGAAAAATGTCAATTGCAGCTCGAATTGTAATCGCGATCTCAGGTTCAATCGCATTATGTACCTTGGTGGCTTTGTTATTATGTATTTCCTTGTACAGAAGAAAAAACGTGGTAAAGATTAGAGCGTCATCGGACCTCTTTAAAGGGCAACATAAAATGATTTCTTACGAAGAGCTTCGTTCAGCAACGGGGAACTTTGATCAGACAAATTCGATTGGAAGTGGGAGCTTTGGGTCAGTCTACAAAGGAATCCTCAGAGAAGGAATGGCCATTGCAGTCAAAGTTCTGGACCTAGGACAAAATGGAGCTTCCAAGAGCTTTTTGGCTGAATGTGAGGCTTTGAGGAACGCAAGACATCGGAATCTGGTTAAACTGATTACCTCTTGCTCAAGTGTTGATTTTGGGAACGTGGAGTTTTGCGCTTTGGTTTATGAATTCATGGGTAATGGGAACTTGGAGGATTGGAGTCGAGGAAGAAGAAGGCATGCAAGTGGAGATGGGTTGAATGTTGTGGAGAGGTTGAACGTGGCCATTGATGTTGCATGTGCCATGGACTACCTGCACCATGACTGCGAAGCTACAGTGGTGCATTGTGACCTTAAGCCAAGCAACGTAGTTTTGGACGAGGACATGACTGCAAAGGTAGGAGACTTCGGGCTGGCAAGGCTGCTGGTTGAGAGAGCCGGTGATCAACAGTCTTCCACTACCACTACATATGGCCTCAAGGGTTCTATTGGATATATACCTCCAGAGTACGGATTGGGTGGGAAACCGTCAACAAGAGGAGATGTTTACAGCTACGGTGTCATGTTGCTGGAGCTCTTCACGGGGAGGAGCCCAATCCACGAGGCTTTTACTGGGGGCGTAAGCATAGCCAAGTGGGTGAAATCAGCCTTTCCGGACAGGACTACCCAAGTCTTGGACCCTAACCTGCTACTACTAATGGAAAATGTCCATCACGAAGGCCGACCGATAACTCCAAAAATTCAAAAAGAATGCTTGGTATCAATAATCGGGGTTGGGCTATGTTGTGCTATTGAATCTCCTGAAGCACGCATTAGCATGCGAAACGTTCTCCACAAGCTGAAGAGTATTAGAGACAATATATGTCAAGATATAAAATGA 3027 0.4424 MAFLFVFWFGVLAVLSSQKPSFVVDSAALNTLTDKEALLSFKTTADPSNILSTWNKNMILCNWTGVVCNEIRQRVVGLDLQGLGLSGTVSPHLANLSFLRSLHLQNNQFSGILPDRIGDLSRLRVLNMSSNRIQGAIPRNIRRCLELVVLDLTGNEVSGVIPMELERLSKLQVLKLRGNQLSGAIPPSIGNLSSLTTLELTTNSLGGTIPSDLGRLRNLEHLQLSSNYLTGMVPPTLYNISSLVLIDLASNQLWGKFPSDVGDTLPNLLEFKFCLNKFTGGLPGSLHNLTKIQGIRISNNFLVGSVPPGLGNLPDLRLYKIGLNRIVSSGDAGLSFINSLTNCTHLEFLSFDGNLLEGVIPESIGNLSTVLTKLYMGGNRIYGNIPASIGRLRGLDLLNLSHNSISGEIPFEIGQLKELQKLDLAGNKIAGEIPASLGNLSKLIELKLFGNELVGRIPTTFGNFQRLLWLDLSKNMLNGSIPKEVFRLSSLSILLNLSKNSLIGPLPQEVGNLENIMTVDLSHNALFGNIPASIGNCKSLEELFMAKNLFSGHIPNTLRGVKGLETLDLSSNQLSGPIPDDLQKLQALKLLNLSYNNLEGEVPNDGFFTNLSKVHLQGNTKLCFPSACESNQSHGKMSIAARIVIAISGSIALCTLVALLLCISLYRRKNVVKIRASSDLFKGQHKMISYEELRSATGNFDQTNSIGSGSFGSVYKGILREGMAIAVKVLDLGQNGASKSFLAECEALRNARHRNLVKLITSCSSVDFGNVEFCALVYEFMGNGNLEDWSRGRRRHASGDGLNVVERLNVAIDVACAMDYLHHDCEATVVHCDLKPSNVVLDEDMTAKVGDFGLARLLVERAGDQQSSTTTTYGLKGSIGYIPPEYGLGGKPSTRGDVYSYGVMLLELFTGRSPIHEAFTGGVSIAKWVKSAFPDRTTQVLDPNLLLLMENVHHEGRPITPKIQKECLVSIIGVGLCCAIESPEARISMRNVLHKLKSIRDNICQDIK* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01922 1008 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Eupl04g01922 1008 SMART LRR_sd22_2 343 369 - -
Eupl04g01922 1008 SMART LRR_sd22_2 561 584 - -
Eupl04g01922 1008 SMART LRR_sd22_2 168 194 - -
Eupl04g01922 1008 SMART LRR_sd22_2 416 442 - -
Eupl04g01922 1008 PANTHER OS04G0122200 PROTEIN 214 1000 - -
Eupl04g01922 1008 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Eupl04g01922 1008 SMART serkin_6 700 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01922 1008 FunFam LRR receptor-like serine/threonine-protein kinase EFR 336 634 - -
Eupl04g01922 1008 Pfam Protein tyrosine and serine/threonine kinase 703 994 IPR001245 GO:0004672|GO:0006468
Eupl04g01922 1008 CDD STKc_IRAK 706 999 - -
Eupl04g01922 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Eupl04g01922 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 781 1008 - -
Eupl04g01922 1008 Gene3D Transferase(Phosphotransferase) domain 1 781 1007 - -
Eupl04g01922 1008 SUPERFAMILY L domain-like 43 326 - -
Eupl04g01922 1008 Gene3D Ribonuclease Inhibitor 187 335 IPR032675 -
Eupl04g01922 1008 SMART LRR_typ_2 561 584 IPR003591 -
Eupl04g01922 1008 SMART LRR_typ_2 120 144 IPR003591 -
Eupl04g01922 1008 SMART LRR_typ_2 513 537 IPR003591 -
Eupl04g01922 1008 SMART LRR_typ_2 96 119 IPR003591 -
Eupl04g01922 1008 SMART LRR_typ_2 585 610 IPR003591 -
Eupl04g01922 1008 SMART LRR_typ_2 168 192 IPR003591 -
Eupl04g01922 1008 SMART LRR_typ_2 416 440 IPR003591 -
Eupl04g01922 1008 SMART LRR_typ_2 216 239 IPR003591 -
Eupl04g01922 1008 SMART LRR_typ_2 464 488 IPR003591 -
Eupl04g01922 1008 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 77 335 - -
Eupl04g01922 1008 Gene3D Ribonuclease Inhibitor 336 633 IPR032675 -
Eupl04g01922 1008 ProSiteProfiles Protein kinase domain profile. 700 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01922 1008 Pfam Leucine rich repeat 539 598 IPR001611 GO:0005515
Eupl04g01922 1008 Pfam Leucine rich repeat 99 156 IPR001611 GO:0005515
Eupl04g01922 1008 Pfam Leucine rich repeat 371 429 IPR001611 GO:0005515
Eupl04g01922 1008 Pfam Leucine rich repeat 194 253 IPR001611 GO:0005515
Eupl04g01922 1008 SUPERFAMILY Protein kinase-like (PK-like) 682 996 IPR011009 -
Eupl04g01922 1008 SUPERFAMILY L domain-like 369 625 - -
Eupl04g01922 1008 PRINTS Leucine-rich repeat signature 585 598 - -
Eupl04g01922 1008 PRINTS Leucine-rich repeat signature 564 577 - -
Eupl04g01922 1008 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524
Eupl04g01922 1008 FunFam LRR receptor-like serine/threonine-protein kinase EFR 671 780 - -
Eupl04g01922 1008 Gene3D Phosphorylase Kinase; domain 1 681 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01922 Eupl-Chr4 44526178 44533635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01922 22 1001 Receptor kinase-like Gene Family AT3G47570 42.672 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Eupl04g01922 PK_Tyr_Ser-Thr 6.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01922 - - nnu:104612143 1240.33